Query= MSMg01no455_n07.b1 MSMg01no455_n07.b1 CHROMAT_FILE:
MSMg01no455_n07.b1 PHD_FILE: MSMg01no455_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:27 2005
(271 letters)
>mm_chr8_88115916_88116586
Length = 671
Score = 476 bits (246), Expect = e-139
Identities = 264/270 (97%)
Strand = Plus / Minus
Query: 1 ctggccttgaggctaccttccagaccggcccacgcctcatttccaactcagcctgagtta 60
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 363 ctggccttgaggctaccttccagacccgcccacgcctcatttctaactcagcctgagtta 304
Query: 61 agaaaacggaccggaaattgaagcagttcagcacagcagagcaagcctgagttgcctcgc 120
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 303 agaaaatggaccggaaattgaagcagtacagcacagcagagcaagcctgagttgcctcgc 244
Query: 121 ttgtggtcctttctgggttgtgattgcaaacagtctagtacacgggtcagcgaggtggct 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttgtggtcctttctgggttgggattgcaaacagtctagtacacgggtcagcgaggtggct 184
Query: 181 cagtgggtaaaggtaccaccaagcctcacaactgaggatacaggcaggtttgaagagaac 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 cagtgggtaaaggtaccactaagcctcacaactgaggatacaggcaggtttgaagagaac 124
Query: 241 cccttgacagcgcttttaggccagcctggt 270
||||||||||||||||||||||||||||||
Sbjct: 123 cccttgacagcgcttttaggccagcctggt 94
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space: 173444
Effective search space used: 173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no455_n07.g1 MSMg01no455_n07.g1 CHROMAT_FILE:
MSMg01no455_n07.g1 PHD_FILE: MSMg01no455_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:27 2005
(461 letters)
>mm_chr8_87935161_87936021
Length = 861
Score = 756 bits (391), Expect = 0.0
Identities = 447/469 (95%), Gaps = 12/469 (2%)
Strand = Plus / Plus
Query: 1 caggacagtcaggactacacagagaaagcctgtctcgaaaaacaaaaaa----aaaaac- 55
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 195 caggacagtcaggactacacagagaaagcctgtctcgaaaaacaaaaaaaaacaaaaaca 254
Query: 56 -aaaaacaaaaaaaaaaacaaaaaaaaaaacaaaaaaac-aaaaaaaaatctttgaacct 113
||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 255 aaaaaacaaaaaaaaaaa-aacaaaaaaaacaaaaaaacaaaaaaaaaatctttgaacct 313
Query: 114 tttaccactaatttataacaatatggaattttacctaatgtaaccctttaggtttccaat 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tttaccactaatttataacaatatggaattttacctaatgtaaccctttaggtttccaat 373
Query: 174 aaaaatctgtgttttgttttgatttttaaaactaaaaatgtatgggctgcgagtgtgggg 233
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 374 aagaatctgtgttttgttttgatttttaaaactaagaatgtatgggctgcgagtgtgggg 433
Query: 234 tcagaagtaaacctgtgtactgcgctcaaaactcagcactgcaacaaaaaaaaaagaaaa 293
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tcagaagtagacctgtgtactgcgctcaaaactcagcactgcaacaaaaaaaaaagaaaa 493
Query: 294 aaaaattttaaaggctactttaattctttttttaaaaaaaaaaaaaaatatttattttta 353
||||||||||||| ||||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 494 aaaaattttaaagactactttaattctttttttttaaaaaaaaaaagat--ttattttta 551
Query: 354 tgagaacactgtagctttcttaagacacaccaaaa-aagggcatcggatcccattacaaa 412
||||||||||||||||||||| |||||||||| || |||| |||||||||||||||||||
Sbjct: 552 tgagaacactgtagctttcttcagacacaccagaagaagg-catcggatcccattacaaa 610
Query: 413 tggttgtgagccaccatgtggttgctgagaattgaactcaggacctctg 461
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tggttgtgagccaccatgtggttgctgagaattgaactcaggacctctg 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
