Query= MSMg01no455_o08.b1 MSMg01no455_o08.b1 CHROMAT_FILE:
MSMg01no455_o08.b1 PHD_FILE: MSMg01no455_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:32 2005
(521 letters)
>mm_chr8_61094203_61095123
Length = 921
Score = 712 bits (368), Expect = 0.0
Identities = 411/426 (96%), Gaps = 7/426 (1%)
Strand = Plus / Minus
Query: 68 tttaatcccagcactcaggaggcagaggcaggagaatttctgagtttgaggccagcctgg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 tttaatcccagcactcaggaggcagaggcaggagaatttctgagtttgaggccagcctgg 862
Query: 128 tctacaaagtgagttccaggacagccagggctatacagagaaaccctgtctcaaaaaaaa 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tctacaaagtgagttccaggacagccagggctatacagagaaaccctgtctcaaaaaaaa 802
Query: 188 aaaaa-aagaaag-aaaaag-aaagaaggaaag--aaagaaagaaagaaagaaagaaaag 242
||||| || |||| |||||| |||||| ||||| |||||||||||||||||||||||||
Sbjct: 801 aaaaagaa-aaagaaaaaagaaaagaaagaaagaaaaagaaagaaagaaagaaagaaaag 743
Query: 243 aaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaagaaaaaagaaaattata 302
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aaaagaaaag-aaagaaaagaaaagaaaagaaaagaaaagaaagaaaaaagaaaattatt 684
Query: 303 cccattgtcccatgtcaaaaggtttttttcacattaaagagtatttttgaacttgtttct 362
||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 683 cccattgtcccatgtcagaagggttttttcacattaaagagtatttttgaacgtgtttct 624
Query: 363 tttcatttttgataatcttaaagatgcatactatagtgagatcaagtctaccctttctcc 422
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 623 tttcatttttgataatcttaaaaatgcatactatggtgagatcaagtctaccctttctcc 564
Query: 423 ttcatccaactacactcacgcccaccactctctctcaaattaattactatctctcattat 482
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttcatccaactccactcacgcccaccactctctctcaaattaattactatctctcattat 504
Query: 483 tatatt 488
||||||
Sbjct: 503 tatatt 498
Score = 54.9 bits (28), Expect = 1e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 494 tgaaatattaacaatgtagttgcctaaa 521
||||||||||||||||||||||||||||
Sbjct: 32 tgaaatattaacaatgtagttgcctaaa 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 2
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_o08.g1 MSMg01no455_o08.g1 CHROMAT_FILE:
MSMg01no455_o08.g1 PHD_FILE: MSMg01no455_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:32 2005
(619 letters)
>mm_chr8_60958635_60959653
Length = 1019
Score = 1158 bits (599), Expect = 0.0
Identities = 614/619 (99%)
Strand = Plus / Plus
Query: 1 tggtcactattgtattatcaaatttagtatatatgcattgcaaaggaacagaaaagattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtcactattgtattatcaaatttagtatatatgcattgcaaaggaacagaaaagattg 260
Query: 61 ggaaataaggctctaaaatttatttgtctttgtgtgtgtaatcgaggctttataaattat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaataaggctctaaaatttatttgtctttgtgtgtgtaatcgaggctttataaattat 320
Query: 121 cattagttgtagtattttattccaatcatttcagttacacctgaaaattgtttttgcaac 180
| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 321 ccttagttgtagtattttattccaatcatttcagttatacctgaaaattggttttgcaac 380
Query: 181 ctcatctactgatataaacattatatttactaagagatgatttatccaaattgctttttt 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcatgtactgatataaacattatatttactaagagatgatttatccaaattgctttttt 440
Query: 241 cagctttggggaaaggtttgtagaacaaaatgataaaatatgctttttttcatattttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagctttggggaaaggtttgtagaacaaaatgataaaatatgctttttttcatattttgt 500
Query: 301 gtaatgacagcagttatatgtcctaaaaccttatatgtacacaattattttatcttttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaatgacagcagttatatgtcctaaaaccttatatgtacacaattattttatcttttct 560
Query: 361 aatagtctctacttcaacctctgtggaaaatttctacacgaatcaatgtttgcttactgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatagtctctacttcaacctctgtggaaaatttctacacgaatcaatgtttgcttactgc 620
Query: 421 tatatataaaattctcaatgaggctatgaatctacagaactaagtcagctagaaagacaa 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatatataaaattctcaatgagggtatgaatctacagaactaagtcagctagaaagacaa 680
Query: 481 aaaaattagccaattcaccaacaaatatatgtgtacatacatggttcatggttattttcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaaattagccaattcaccaacaaatatatgtgtacatacatggttcatggttattttcc 740
Query: 541 taaaagttattttgtgaaatacttaagtgttgtaaaacaaatattggagtctgttgaaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaaagttattttgtgaaatacttaagtgttgtaaaacaaatattggagtctgttgaaga 800
Query: 601 agccatatttaataaacaa 619
|||||||||||||||||||
Sbjct: 801 agccatatttaataaacaa 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
