BAC Information

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BAC

Clone NameMSMg01-456G14
Chromosome8 (Build37)
Map Location 63,291,767 - 63,292,005
singlet/doubletsinglet
Overlap genenone
Upstream geneAadat, Mfap3l, LOC100040679
Downstream gene2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4, Palld, LOC100040872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456G14.T7 (MSMg01no456_g14.b1)MSMg01-456G14.TJ (MSMg01no456_g14.g1)
ACCAG542720AG542721
length748786
length of high quality
(start - end)
225 (83 - 307)240 (77 - 316)
definitionCHROMAT_FILE: MSMg01no456_g14.b1 PHD_FILE: MSMg01no456_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:13 2005CHROMAT_FILE: MSMg01no456_g14.g1 PHD_FILE: MSMg01no456_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATAATTTGCGGCCGCTAAANGAANTCACTTCAAAAGAGGGCCGCGGAAN
TCTGGATTCCGTAAACAGCAATGNAATCTTGGCTATTAAGGAAGTCCCAC
TCCTTAGGTTATTTTGCATCTGGTAGGCTGCCCAAACTCCAGGGAATGTC
CCCACACCCATATACAGACAGCATAATTGGAATGAGGGGATTCGTAATGA
CAACAACAAAAGGAGGTATGAAGTCGAGAGGGAGGGATATGGTGCACTGG
AGCCTAGGGATGTAGCCCATTGGTAGAGCAATTGCCTAGCATGTTTGAGT
CCCTGTTTTTGATTCTTTGTCACCACAAAAAGAATCAGGGGAAGGGAAAA
GAATATAGCTTTTTAAATACAAATCCACTCTCTTGTTAAATATGCTACAG
CTAAATAGACCCCGCCGCCAAACTTGCTTCAACTGTGTCTTAATTTTCTT
GCCCATAATAGAGGGCCAATATTAATGCTTCCTTAAAATGTCCCAGAGGA
CATATATGGGAAGGTGTCACAAGTATGCAGCAGGCACATCTGTCACGTGT
GAGATGTTATCGTCAGCTACCTTCGATGTTTTGATATGGGTGTAAAATTA
CCTGTTTATGGAAACCCCATACTCTTGGTTTGATTTTTTTTCCTCCCCTT
CCGACGGGAATATGTATAATGCCGATTGGTTGGTCTCTTTTAAATTACAC
CAGGCGGGTTTTTCCCTATTTTGAGGTAATTTTTTCCGGTTCTGGTAT
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGATGATTATTAAATTAAATTGAA
ATTTTTGTAGTAATATCTTAGATATACATGTGCTCAGGATAGCTAAACTT
TCTTATGAATTTTTTAAATAATTTTTTTATACTTGCCTTGTATATCTACC
TTTCTTTTCTGGGGGTTTAATTACTTTTATTTATCTAGTATTTTAAAAAT
GTTTTGGTCACCACTGCAAGATCTTGAATTCTCTGTAGATTAAATGTGCC
GACCTTGGCCATTTCTGATCCTTATGATGGCCGAGGAGCCCCTGAAAAGG
AAATTATATCTTTTGAAGAGGTCAGAATGAGAAAGCTATTCCTTAGAGAC
TACAATTCCTAAGACCCCCCGCCTAGTTACTCGAGGTGATAGCTACCAGT
ATCTTGGTTAGCATATCTGTAGGCTCAGAGACCGTATGTATGCTAACCAG
TGTTTATAATTAATCGGTGCCATCTTTTCAGTTTCCTTCATACCCATTTA
CGTTCTTGTTTTTATGACACCCTTCCCTCCCTTATTCCTTTTGTCTGTCT
TTGTTTTTCCCTTCTTTTTTCCTTTCTTTCCCTCTTTCTTTTTCTACTTC
TTTCTTCCTTTTTTTTTTCTCCTTTTACTCCTCTTTTTTTCTTCTCCTCT
ATTTTTCCTCTTTTTCCTCTTCTTTCCCAACTCTTTTTTCCTTCCCTTTC
TTCCGTTTCCTTCCTTCGTCTCTTTCTGTTCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_g14.g1 MSMg01no456_g14.g1 CHROMAT_FILE:
MSMg01no456_g14.g1 PHD_FILE: MSMg01no456_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:13 2005
         (240 letters)



>mm_chr8_63291462_63292101
          Length = 640

 Score =  381 bits (197), Expect = e-110
 Identities = 230/241 (95%), Gaps = 3/241 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatgattattaaattaaattgaaatttttgtagtaatatcttagatatacatgtgctca 60
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 544 tgatgattattaaattaaattgaaatttttgtagtaatgtcttagatatacatgtgct-a 486

                                                                       
Query: 61  -ggatagctaaactttcttatgaattttttaaataatttttttatacttgccttgtatat 119
            ||||||||||||||||||||| |||||||  | ||||||||||||||||||||||||||
Sbjct: 485 tggatagctaaactttcttatg-attttttttagaatttttttatacttgccttgtatat 427

                                                                       
Query: 120 ctacctttcttttctgggggtttaattacttttatttatctagtattttaaaaatgtttt 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 426 ctacctttcttttctgggggtttaattacttttatttatctagtattttaaaaatgtcac 367

                                                                       
Query: 180 ggtcaccactgcaagatcttgaattctctgtagattaaatgtgccgaccttggccatttc 239
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggtcaccactgcaggatcttgaattctctgtagattaaatgtgccgaccttggccatttc 307

            
Query: 240 t 240
           |
Sbjct: 306 t 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)