BAC Information

Click to search

BAC

Clone NameMSMg01-456I08
Chromosome8 (Build37)
Map Location 110,131,758 - 110,132,206
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7
Downstream geneLOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456I08.T7 (MSMg01no456_i08.b1)MSMg01-456I08.TJ (MSMg01no456_i08.g1)
ACCAG542804AG542805
length734799
length of high quality
(start - end)
460 (76 - 535)247 (72 - 318)
definitionCHROMAT_FILE: MSMg01no456_i08.b1 PHD_FILE: MSMg01no456_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:22 2005CHROMAT_FILE: MSMg01no456_i08.g1 PHD_FILE: MSMg01no456_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
CGCGGAATTCTGAATACCATTTCAGAGCATAATTGGCAGTAAAGGGAACG
GAATGGGTACTTCCTCGCTGAGTGGCCCCTTTATCCATGGAGCTCCAGAT
GCCTTCCCCCACCCCACCCCAGGAAAGGGTTGGACTCCTAAAGGGCAGAT
TCTATTATCTGAGGGGTTATAGGGACAAAGCTGAGGCACAAAAGGCAAGC
CATGTCTTCCCCTGATTATCACCAAATGCTCTGTAGAGCCCCAAACAGGA
CCAGACTCATTCTTCTTTTTAGACTGCACTCACTTTACGGTGCAGAGACC
TACGATTTTTGAATGCGTTTATTTCCACGGCCGAGAACTGTAGAGCTCAG
AACCCATGTACACAGCTGAGTAGCTGTCTGAAGAGTAGAAACTGGGTAGC
TTACAAGCTGGGTTCCATGATGCTTTGGAACAAGCAACGGGAACAAATAA
AAATCTGTTTGTTTGTTTTTTTTTTTTTTCATATTTTCTACCTGCGGACT
GACTTGGCTTCTTGGTAAACATCCCAATACGGGGGTAAGACACCTGTTAG
CTATACTGAGGTTTTTGGAGGTCCTACCTCTGCCCTCCTTCCTTTTTGTT
TTTTGTATACTCCTTATCCCATTTCACCACTTTTTATTTTCCTCCCTTCT
TCCCCCTGGCGCCTTTATTTCCCGCCTTTGTCTN
TCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCGAAATCACTATATAGATTAGACTGACCTTGAACT
CACAGAGGTCTGCCTGCTTCTGTCTCCTGAGTGCTGTGATTAAAGGTATG
CATTACTACACTCATTTAAGAGAATTTATTTTTTAAAAAGCGGACAGTAA
GCTGGATATGGTAATGCATGCCCTTAGCCCCAGCACTTGGAGGCAGAGGC
AGTTTTATGTCTATGAGTTTGAGGCCAGCCTGGTCTACAGAGCATGTTCA
AGGTAGCCAGGGTTACTTTAGTAATTTTGCCTCAAAAACAAAACAAAACA
AAAAACCTTTTTAAAAGGAGAATAAATTTATAGCATATGAATTATGGCTC
AGGAATAATAATTAGAGACCGCTTCACTCTTGTTTCAAATGCACCCTTTG
TGCCCGGTTGGCGTACCCTTGATTCTGACATACTGCTTGTTCGTGTTTGT
CATTCTATATCCGCAACACTTTTCTTTTCCTTTTCGATCCTTCCCCTCTC
CGATGTCTTGTTTTTTTCCCCTTTTCTTCCCTTCTTCACTCTTTTTCTCC
TTTATTCCCACCCCTTATCCATTATTTTCTCTCTTGCTTTTATTTCTCCT
TCTTTAACTACATTTCTTTTTTTGTTTCTTCTTCCTTCGTTTTTCCTACT
CCTTTTTTTCCACTTTTTTACCCCTCTCCTCTCATCCTACTATTTCTCGT
CTCCTTTCTTACCCTTTTCCATTCCTACATTTTTTGTCTCTCACTCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_i08.b1 MSMg01no456_i08.b1 CHROMAT_FILE:
MSMg01no456_i08.b1 PHD_FILE: MSMg01no456_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:22 2005
         (460 letters)



>mm_chr8_110131582_110132443
          Length = 862

 Score =  739 bits (382), Expect = 0.0
 Identities = 436/466 (93%), Gaps = 23/466 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcataattggcagtaaagggaacggaatgggtacttcctcgctgagtggcccctttatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcataattggcagtaaagggaacggaatgggtacttcctcgctgagtggcccctttatc 566

                                                                       
Query: 61  catggagctccagatgcctt--cccccaccccaccccaggaaagggttggactcctaaag 118
           | ||||||||||||||||||  ||||| |||| |||| ||||||||||||||||||||||
Sbjct: 565 cgtggagctccagatgccttcccccccccccccccccgggaaagggttggactcctaaag 506

                                                                       
Query: 119 ggcagattctattatctgaggggttatagggacaaagctgaggcacaaaaggcaagccat 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggcagattctattatctgaggggttatagggacaaagctgaggcacaaaaggcaagccat 446

                                                                       
Query: 179 gtcttcccctgattatcaccaaatgctctgtagagccccaaacaggaccagactcattct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtcttcccctgattatcaccaaatgctctgtagagccccaaacaggaccagactcattct 386

                                                                       
Query: 239 tcttttt----agactgcactcactttacggtgcagagacctacgatttttgaatgcgtt 294
           ||    |    |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tc----tcgcaagaccgcactcactttacggtgcagagacctacgatttttgaatgcgtt 330

                                                                       
Query: 295 tatttccacggccgagaactgtagagctcagaacccatgtacacagctgagtagctgtct 354
           |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 329 tatttccatggccgagaactgtagcgctcagaacccatgtacacagctgagtagctgtct 270

                                                                       
Query: 355 gaagagtagaaactgggtagcttacaagctgggttccatgatgctttggaacaagcaacg 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gaagagtagaaactgggtagcttacaagctgggttccatgatgctttggaacaagcaacg 210

                                                         
Query: 415 ggaacaaataaaaatctgtttgtttgttttttttttttttcatatt 460
           ||||||||           |||||  ||||||||||||||||||||
Sbjct: 209 ggaacaaa-----------ttgtt--ttttttttttttttcatatt 177


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 862
Length adjustment: 10
Effective length of query: 450
Effective length of database: 852
Effective search space:   383400
Effective search space used:   383400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)