BAC Information

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BAC

Clone NameMSMg01-457C10
Chromosome8 (Build37)
Map Location 87,101,406 - 87,101,643
singlet/doubletsinglet
Overlap geneCacna1a
Upstream geneGpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
Downstream geneIer2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457C10.T7 (MSMg01no457_c10.b1)MSMg01-457C10.TJ (MSMg01no457_c10.g1)
ACCAG543285AG543286
length790821
length of high quality
(start - end)
238 (82 - 319)246 (78 - 323)
definitionCHROMAT_FILE: MSMg01no457_c10.b1 PHD_FILE: MSMg01no457_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:14 2005CHROMAT_FILE: MSMg01no457_c10.g1 PHD_FILE: MSMg01no457_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAAACTCGC
GCGGAATCNTCGGTGTTTTCTCTATAAGTGTGGCTCTGTGAGCTATCTGA
CTCACAGCTGGTGTGAAGTCTCAGGACATGCAAATGGACCAAGGCTGCAG
TCCAAGGGACAAATGTGTCCCTATTGGTTAATGCCCAATCCAGATCTTCC
CGGCACCAGGGCTTCTGGTGGAGAGCACCATTTCCTGGCATGGTGAGACA
AGCTGTTTTGTGCTGTGTGCGGTTGCTGCTTCCAGCCATATTGGTGAGTG
TGTTTGAGTGTGTGTGTGTGTGCGTGCGTTTGCNCCCNCNNCCCCCNCCC
CCCCCCTTTTTTTTTTTCCCCCCCCCCCCCCGGGGTTTTTTTTCTTGTGC
TTTTTTTTTTTTTTGTCCCCCTTTTTTTTTTTTCTCTTTCTTTCCTTCCT
TTCTCTTTTTCCTTTATTCTCCTCTATTTTCAACACAATCTTTCCTATCA
TCAATCTTTTCACTTTCTCACTTTTTATCTTCTTTTCATTCTTCTTATCT
ATCCATCCTTCTTAACCTCCTCTCCTTTTCTTTATTTCCCTTCTTTTCCT
TCTTTGCCCTTTTTTTATTAATCCTATTTATATACACACACTATTCCCCA
TTCAACACCCCCACTTTTTTTTTTTTTTTTTTTCCACGTCCCCACCACCC
GTAATATCTTATAATTCCTTATACCCTTTCATTTTTCTGCTTACATCCCC
ACCTTCTTGCATCTTATCCTTTCTTTCTCCCCCCTCTTTT
NNCCTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTTGGGATAATGGTGGCGC
ATGCCTTTACCCCCAGCATGCAGGAGGCAGAGGCAGACAGATCTCTGAGT
TGGAGGCCAGCCTGGTCTATAGAGTGAGTTCCAGGACAATCAGGACTACA
CAGAGAAACCCTGCCTCATGAAAAGAAAGAAAAAAGGAAAAAAAAAAGAA
AGAAAGATGTATGGAATGAGGTTATGTATGTTCTGAGATGATGGAGTTCT
TACTGTGATGTTCAGGGAAACATTTGTTTTTTACAGATGATGGGTGGATG
TATGTATGTATGTTTTTTTCTCCTCCCCTTTTTCTGCAGCTTTTTATTTT
TTTTTTCTTTTTTTTTTATTCTTCCTTTCTTTTCTTTTCTTTTTTTTTGA
TTTTTTTTAGCTCTCCTCTTTTTTTTTCCTTTCCCCTTTCTTTTTGTTTA
ATTCTTTTTTCGCCTTTTTTTGTATCTTATTATCTTTTTTTTTTGTTCTC
CTCTTTTTGTTTCTTTTTGTTGCTCTCTTTTTTTCTCTCTTTTTTTGCCT
TTTTTGTTTTCTATGCGCTTTTTGGTCCTCGTTTTTACCACCTCCTTTTT
GCCTTCCATTTTACTCTTTTTTTCCCCACTATTTCTTTTCTCTCACCTTT
TACTTCTTTCCCTGTTTTCTCTTTTTTTGTTTGTCCCGTTCCCCCTAATT
CCTTCTTATGTCTTCAACTTTGTTTCTGTATTGTTTTTCATCCTTTTACC
CGTTCTTTTTTCCTGTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_c10.b1 MSMg01no457_c10.b1 CHROMAT_FILE:
MSMg01no457_c10.b1 PHD_FILE: MSMg01no457_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:14 2005
         (238 letters)



>mm_chr8_87101206_87101843
          Length = 638

 Score =  429 bits (222), Expect = e-125
 Identities = 234/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctctgtgagctatctgactcacagctggtgtgaagtctcaggacatgcaaatggacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ggctctgtgagctatctgactcacagctggtgtgaagtctcaggacatgcaaatggacca 379

                                                                       
Query: 61  aggctgcagtccaagggacaaatgtgtccctattggttaatgcccaatccagatcttccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aggctgcagtccaagggacaaatgtgtccctattggttaatgcccaatccagatcttccc 319

                                                                       
Query: 121 ggcaccagggcttctggtggagagcaccatttcctggcatggtgagacaagctgttttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  | | 
Sbjct: 318 ggcaccagggcttctggtggagagcaccatttcctggcatggtgagacaagctggctggg 259

                                                                     
Query: 181 gctgtgtgcggttgctgcttccagccatattggtgagtgtgtttgagtgtgtgtgtgt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gctgtgtgcggttgctgcttccagccatattggtgagtgtgtttgagtgtgtgtgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)