BAC Information

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BAC

Clone NameMSMg01-457K11
Chromosome8 (Build37)
Map Location 32,450,948 - 32,451,195
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568
Downstream gene7420700N18Rik, LOC100041329, EG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457K11.T7 (MSMg01no457_k11.b1)MSMg01-457K11.TJ (MSMg01no457_k11.g1)
ACCAG543669AG543670
length749776
length of high quality
(start - end)
248 (328 - 575)244 (79 - 322)
definitionCHROMAT_FILE: MSMg01no457_k11.b1 PHD_FILE: MSMg01no457_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:56 2005CHROMAT_FILE: MSMg01no457_k11.g1 PHD_FILE: MSMg01no457_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGC
GGAATTCTCTGGGGTTTCTGACACTCAGAGCACACCCATTACAGTCCATC
CCCAGAAAACTCACTTGCTTGCCATAACCTTCCCCACATGACTTATGCCA
TCTGCTATTGTGGTCCCACAGCTAAAGTAGAGGCACAGTAGTCACCTTCC
AGAACAGACCTGGGGTTTTCACATCCAGGAGATGAAGGAGGTATGCTTTT
ACCATTTCTAGTTTGTGCCCCTTACCCTGGCCTCACTTGCCTCTTGCACC
CACTTGACATCACAAGAAGTCCTTTCTATGGGGAAGCTAAAGTGAGGTCA
CAGGATTCTGGGTTACTGTTTACATCTTAGTGCTCTTACAAGGCTTTTTA
TATCCTTCGATCTGCTCTTTTCTTCTTATTTATTTACATGTTTAAGGATT
AATAAAAGCTTTAGAAATAAATTTGCCCTGGGTGAATGAATTTTTAGTCC
ACACGTCTTTTCTCCATAAACTCTCTAAACCTTGATTTATTCTACAGTTG
AGTGTAGTCACAACTCTGTGATGACTGAGGAGAGATTTCTAAACTTCTCA
CGTATTGCTTTCTTAGGCCAAGAACAAAACCATGAAAAACAATTTGTTTT
TTTTTTGGGCTTTACCTTCCCAGAAAGATAATACTCTATGATAATACCGG
ATGGGGTAACTATTTCAGATAATGCTTATCCCTTGGTTGATCTATGATN
NNNNCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTCGAAAAATTCACACGAATGTCCGCTCAGTTTG
CAGAAGATAGTTTCCTTGGCGTCTTTCATCACCTCTGGCTCATAGAAGCG
TTCTGCCTCCTCTTCCACACAGATCTGTGAGCTCTGAGAAAACATCCATC
CTATTTAGGGTTTGAGTGGCTGCTCTGAGGGCTCTGATTCTCTGAGTAGC
ATGTGTTTGTGGGTCTTTTCTGCTTGCTCTCTTCTCCTATGAGGGGTGAA
GAGAAGGCAGAAGGAGAAGTCTTCATGCTTGTGATAGCTGTGGTGTTTGC
ATACGATGATGGTGCTGATTATTACAGCCTGAGGGATGGAGGATTCCTTG
GCTTTGTGAATTGCTCTGGGAGTCCTGATAAAAAGGAAAAGGACAGGATG
AGGTGAGCTAACAACTCAAACAGGGTAGGAGTTGAGAAGGTTTCCATGCA
AATGCTGATAGGACCATCTCTTGCAGGTGCAAGGGATCCTGTCTTTGATA
ATTTACCTTTCCTGTAACATGTTATGAATTATTACGGTATTAAATAGCCC
AAGGCAGGTGTCCTCTTTTCCAAAGGTTATTGGTCCTTCTTCGGTTAAAC
TGGTCTCCCTTGAATAATCCTTTTTTTTTTTTTTATTAACACATCGGTTT
CATTGTCCACTTGTTTTTCTGTCTTCTTCCCTGTTCTTCCTTCTGTACTC
CTTTTGTACCTCCCTCTCCTATCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_k11.b1 MSMg01no457_k11.b1 CHROMAT_FILE:
MSMg01no457_k11.b1 PHD_FILE: MSMg01no457_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:56 2005
         (248 letters)



>mm_chr8_32450748_32451395
          Length = 648

 Score =  472 bits (244), Expect = e-138
 Identities = 247/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggggaagctaaagtgaggtcacaggattctgggttactgtttacatcttagtgctctt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 448 atggggaagctaaagtgaggtcacaggattcagggttactgtttacatcttagtgctctt 389

                                                                       
Query: 61  acaaggctttttatatccttcgatctgctcttttcttcttatttatttacatgtttaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acaaggctttttatatccttcgatctgctcttttcttcttatttatttacatgtttaagg 329

                                                                       
Query: 121 attaataaaagctttagaaataaatttgccctgggtgaatgaatttttagtccacacgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 attaataaaagctttagaaataaatttgccctgggtgaatgaatttttagtccacacgtc 269

                                                                       
Query: 181 ttttctccataaactctctaaaccttgatttattctacagttgagtgtagtcacaactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttttctccataaactctctaaaccttgatttattctacagttgagtgtagtcacaactct 209

                   
Query: 241 gtgatgac 248
           ||||||||
Sbjct: 208 gtgatgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)