BAC Information

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BAC

Clone NameMSMg01-459F08
Chromosome8 (Build37)
Map Location 31,321,434 - 31,321,830
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc5d, LOC100041237, EG628189
Downstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459F08.T7 (MSMg01no459_f08.b1)MSMg01-459F08.TJ (MSMg01no459_f08.g1)
ACCAG544953AG544954
length546781
length of high quality
(start - end)
---392 (71 - 462)
definitionCHROMAT_FILE: MSMg01no459_f08.b1 PHD_FILE: MSMg01no459_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:13 2005CHROMAT_FILE: MSMg01no459_f08.g1 PHD_FILE: MSMg01no459_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:13 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NGGGGGANNNNCNNNCCCNNTTTTCNNNNCNNNNNNNNNNNNCNNNNNNA
ANNNNNNNNNNNNNNNNNNNNNNNNCCNCCNNNNNNNNNNNNCNNNNNNN
NNNNNNNNNNNNCCTCTAAAAAAATTTTNCCNNCCCGGCTAAAAAACNNA
AANNAAATAACTACAAAAAAAGGGGGCCGNGGGAAATTCNNCCTATTTGC
ATAAATGCAGTTCACAAACTTCATTAGTGCTAATGTGCTGTGCGGTCTAA
GGCGCCTGAGGATCAAGGGTCCCCCAACCTCCAAAAACCCCCCAAAAACG
GGNAAATTGGGAAAGGAAACCCCAAAAAAAGGGGAATTNNTAACCGGGNC
CAAGGGAAAAGGGGNCNCCCCNCCCNCCCCCTCGGGGNNAAANNNNCCCC
CANNCCCAAAAAGGGGGGAGGGCGTGGGGGCCCCGCACGNAATTGATTCT
ANNNNGGANNCCCAGCAAGCCCCTTTNTTTTGGCCCTNNNTNNCANNNGG
TACTCAAAAATGGTTAATTTNTCGTTTTTTTTTTAACGCACAGAAC
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACAGGATGGTGGACAACTATAATCACTGTC
ACTCAGTAGGGTTAGACCAAAGGACTGAGAGTTTCTGAAGGTTGGATTGG
GATACATAATGAGTTTAAGACTAGCTTCAATGTTTGAAAAAAGGTCTGTC
TCCAAAACAAAATACAAAAGCAAAAAGCTATATCATAGTAAACGATGTTC
TTAGCATCTATAAAATCTGGGGTTAGATACTCAGTGTGGGAAAGAAACAT
AGGCAGAATCCTGTTTTCTTAGGTGCTATGAAAATTGCTATGAAGCTACA
AATAGCTAAGTCTTGTCACAATGTTTCAATGACAAAATAGGGTAACTATT
TGAAAATTTAACCCATTTGAAACACACCCAAAAATAACACTTGGAACTTT
ACTCTCTGGGTTGGTAAGTCAGGGTAACGCATGGAGTAACTGCCCACTAT
TTCTCTCTTTCTTTTACTTCTTTCTCCCCCCCCTTTTTCTTTTTCTTTTC
TCACCCCCCCTCCCCTTTTTTCTTTTTGTTTTTCCCCCTCTCCCTCTCCG
CCTTTTTTTTTTTTCCTTCTCTCCATCGCCGGGTCTATTTTCACCGTTCT
TTTCCATCTTCGCCTTTTTTTCCTCTCTTCCTTTTCTTTCCTTCTTATCT
CTTCTTCTCCTTCCTCCTGTTCCCCCGCCTTTTCTTTTCCATTTTCTTGT
TTTTCCCTTCCCTCCATCCCATCTCTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_f08.g1 MSMg01no459_f08.g1 CHROMAT_FILE:
MSMg01no459_f08.g1 PHD_FILE: MSMg01no459_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:13 2005
         (392 letters)



>mm_chr8_31321234_31322030
          Length = 797

 Score =  667 bits (345), Expect = 0.0
 Identities = 382/397 (96%), Gaps = 5/397 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggatggtggacaactataatcactgtcactcagtagggttagaccaaaggactgaga 60
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaggatggcagacaactataatcactgtcactcagtagggttagaccaaaggactgaga 260

                                                                       
Query: 61  gtttctgaaggttggattgggatacataatgagtttaagactagcttcaatgtttgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 261 gtttctgaaggttggattgggatacataatgagtttaagactagcttaaatgattgaaaa 320

                                                                       
Query: 121 aaggtctgtctccaaaacaaaatacaaaagcaaaaagctatatcatagtaaacgatgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggtctgtctccaaaacaaaatacaaaagcaaaaagctatatcatagtaaacgatgttc 380

                                                                       
Query: 181 ttagcatctataaaatctggggttagatactcagtgtgggaaagaaacataggcagaatc 240
           |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 381 ttagcatctataaaatctggggttagatgctcagtgtgggaaagaaacttaggcagaatc 440

                                                                       
Query: 241 ctgttttcttaggtgctatgaaaattgctatgaagctacaaatagctaagtctt-----g 295
            |||||||||||||||||||||||||||||||||||||||||||||||||||||     |
Sbjct: 441 ttgttttcttaggtgctatgaaaattgctatgaagctacaaatagctaagtcttcatttg 500

                                                                       
Query: 296 tcacaatgtttcaatgacaaaatagggtaactatttgaaaatttaacccatttgaaacac 355
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 tcacaatgtttcaatgacaaaatagggtaactatttgaaaagttaacccatttgaaacac 560

                                                
Query: 356 acccaaaaataacacttggaactttactctctgggtt 392
           || || |||||||||||||||||||||||||||||||
Sbjct: 561 acacacaaataacacttggaactttactctctgggtt 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 797
Length adjustment: 9
Effective length of query: 383
Effective length of database: 788
Effective search space:   301804
Effective search space used:   301804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)