BAC Information

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BAC

Clone NameMSMg01-459G24
Chromosome8 (Build37)
Map Location 57,963,661 - 57,964,044
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212
Downstream geneGm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459G24.T7 (MSMg01no459_g24.b1)MSMg01-459G24.TJ (MSMg01no459_g24.g1)
ACCAG545032AG545033
length792812
length of high quality
(start - end)
388 (43 - 430)273 (73 - 345)
definitionCHROMAT_FILE: MSMg01no459_g24.b1 PHD_FILE: MSMg01no459_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:22 2005CHROMAT_FILE: MSMg01no459_g24.g1 PHD_FILE: MSMg01no459_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTTTGATTCGAGCAAAAGGACTCCTTTCTACAAATTAACAAGTATTT
TACTAAATAAATAAATGCTATTATAGCTATTCTAACAGTAAATAAAACAT
ATTTGGTGACTAGGGTAAATTTGAGGTTGTTACCAAGCTTAAAAATAATT
AACAACAATTACAGTTTCAAGGTAACTAAATAAAGCAACAGAGTAAAATA
AATACAAGGAACAATCAGCATTTTTATTTTGTTATTTTTATATCTGCAAT
TACATTTTTCCTTCCATTTCCTACTTCCACCATCTCCTATATGTCCTGTC
TGAGCTCTCCTTCAAATTCATGGCCTCTTTTTCCACTAATATTTACTACA
GACATATATTTATGTTCATGTATACATGCATACAAAGACACACACACAAA
CATACACACACACACATACATAACACACACCTTAATATATCCCTGCTCAG
TCAATACAAAGTTACTTGTATGCACCTTTATTTATAGTAACTTTGGGAAA
AAAATTGGAAAAATTGGGAGGAAAAGAAATCTTAAAAATCTTGGCCTTAA
TACAGAATTCTATTTCTCGCTCTAACTCTTTTCCCAAAAAAAATTTGGTA
GGAAATAGGTTATTTTTCTTCAACCCTTCTCCTTCTTCGTTCCTTCTATT
ACCTTCCTATTGAATTTATACACCCCTCCTTTCTTTATACCGATACCCCT
TTCTCCGCCTTTTTTCTCCTTTCCCCCGATCTTTCCCATTCC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTTGTATGCTTTAAATATGCTTTAATT
ATTGGCTTGTTTATTGCCATGTATAAGGAAATTCTTTAAATATTCTTTGC
AATATATATCAGTGATTGTACTGGCTAATTTTGTGTCAACTTGACACAGG
CTTCAGTTATCACAGAGAAAGTAGATTCAGTTGAGGAAATGCCTCCATGA
GATCCAGCTGTAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCC
CTTGTGGGTGGGACCATCTCTGGTCTGGCAGTCTTGGTTCCATAAGAGTG
CAGGCTGATCCAGCCAGGAGAGGCTATCCAGAAAGTAACATCCTTTCCTG
GTCTCTGAATCCCCCCCCGACCTGTTTTAGATCTATTCCCTCATTCTCTT
TTTAGATGAACTCTACCCTTTTTTTGTCTTTCTAAATAAACCTTTTCCTC
CCCTATTTTCTTTCTGGCCCTTATTTTTTCTTTTCCCCACTATTTTCCTT
CTCCTACCCATTTTTCCCTCTACCTACTACACCTAACATTTCTCTATCTT
TTCTTTTCCTCCTTTTTTTTCTCCACTATTCTTTCTTACCCCCCTCCCTC
TCTCTTCTCCCTCCTCCCTTCCTTTTTCTTCTTTTTCCCCCTTCCCTTCT
CCCCTCTTTTTTTCCCTTCCCTTGCTCCCTCCCCTCCTCCCTTTTATTTT
TCCTTTTCTATTCTCTCCTTCCATCCTTTCTTCTTTTCCTTCCCCTCTTT
ATTCTTTTCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_g24.b1 MSMg01no459_g24.b1 CHROMAT_FILE:
MSMg01no459_g24.b1 PHD_FILE: MSMg01no459_g24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:22 2005
         (388 letters)



>mm_chr8_57963617_57964404
          Length = 788

 Score =  712 bits (368), Expect = 0.0
 Identities = 380/384 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtttgattcgagcaaaaggactcctttctacaaattaacaagtattttactaa 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gaattctgtttgagtagagcaaaaggactcctttctacaaattaacaagtattttactaa 369

                                                                       
Query: 65  ataaataaatgctattatagctattctaacagtaaataaaacatatttggtgactagggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ataaataaatgctattatagctattctaacagtaaataaaacatatttggtgactagggt 309

                                                                       
Query: 125 aaatttgaggttgttaccaagcttaaaaataattaacaacaattacagtttcaaggtaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aaatttgaggttgttaccaagcttaaaaataattaacaacaattacagtttcaaggtaac 249

                                                                       
Query: 185 taaataaagcaacagagtaaaataaatacaaggaacaatcagcatttttattttgttatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 taaataaagcaacagagtaaaataaatacaaggaacaatcagcatttttattttgttatt 189

                                                                       
Query: 245 tttatatctgcaattacatttttccttccatttcctacttccaccatctcctatatgtcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 188 tttatatctgcaattacatttttccttccatttcctacttccaccatctcctatatgccc 129

                                                                       
Query: 305 tgtctgagctctccttcaaattcatggcctctttttccactaatatttactacagacata 364
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 128 tgtctgagctctccttcaaattcatggcctctttttccactaatttttactacagacata 69

                                   
Query: 365 tatttatgttcatgtatacatgca 388
           ||||||||||||||||||||||||
Sbjct: 68  tatttatgttcatgtatacatgca 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)