BAC Information

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BAC

Clone NameMSMg01-459L08
Chromosome8 (Build37)
Map Location 92,965,321 - 92,965,593
singlet/doubletsinglet
Overlap genenone
Upstream geneTox3
Downstream geneLOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l, AJ237917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459L08.T7 (MSMg01no459_l08.b1)MSMg01-459L08.TJ (MSMg01no459_l08.g1)
ACCAG545237AG545238
length1,190803
length of high quality
(start - end)
---273 (76 - 348)
definitionCHROMAT_FILE: MSMg01no459_l08.b1 PHD_FILE: MSMg01no459_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:44 2005CHROMAT_FILE: MSMg01no459_l08.g1 PHD_FILE: MSMg01no459_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTCGTGCGCGGCGCGTCTTTTCTCGTGCTCTCTTCCTCTACTTCATTC
CTNNTTCTTTTCTCGCTCTCCAACGGGTAATCACAATACTGGAGGGACGT
GAGGTGGCGGAAACTATTACTCTACGTTCCTCTTCTGCGCGAGTAGTTTA
CCAGTGGTCGCGCCTCGCAGGAATGTGCACGACCGATGCGTTGTGTGAGT
AAACCAATATATACGTCTAGAAGAGAGTCTCGGCGTAGATCTAAATATAC
CTAGACCCTTGCTAGGGCGACGATGTGTGTAGCCCCGTCAGGAAGAGCGA
GCCGATAGATGGATAGTCGGGAATATCGGTGTGCGGCGGACCTTCCTGGC
GCTTCGGCTAAGTGATTTTTATAGCCTCATATTCTTAAGCACCGCACGGC
GTCGCGCCAGCTATTAATCGACGGTGCGTCCTATTATCAGCGTCGCAGAC
GTTCGNCCTCCGCCTCGTTCTNAGCTCTCATCAACATCTATTTCTTGCCG
TTGATTTCAACTTTAGTTGGCTGTCACGTGCGACCCGGCGCAGCGCCATA
TATCCACTATGTGCGCGCCCGCCCGCGCGCGCGCGCTGAGTGTCCGGCGT
CTGCCTTGATAAATGCATTATTCAACCACTATATATAAAATAATAACATA
CTACTCACACACGCCCACGTCCCTACGCGGCTATACAAGACTGCCGCATT
ATCGACCCTGCCGAGTTTGCGCACCCATATGTGGTTATAAGAGACGTCGG
CCTCCTCACCAATCGACTCTGCCGCGAGCTCAACAAATCCGATATCGTCT
TCTGCCTCGCCATACTCGTGCCATTCACGCGTAGTACACGTGTGCGACCC
TACACACTCACATCGTTAGCTGATAAAGCGAGTTGAGGAGAAGATGCAGC
TCGCCCACCGTGACTTTAGCCTATCCCATACGGTCACGTTCACGACTAAT
ACTATTACACATGACGTCTTGACAAGATTATCGAGAGGCTCTATGTCATT
GATTGGACCGTGGCGTCGTCGCGTGCGGTCATCGGATTACACGATGAGAC
ATATTGCGCGGCGCACGCGGTCGCTCGTATTGTGCGCTCGCTCGCGCGCC
GGTGATAACCAACACGTTGTGGAACGAAGTGCATAGAGACATACGATACG
CGGCTAGGAGAGAACGCCGTTATATCACTATGATCCTCTN
TCCGATGCTGTGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCTCAGGGTGTTGCAAGGGCTGGG
TCCTGATGCAGGCCATACAGCCTGCTGCTCTGCCCAGCTCTTGCTGATCT
CTCTAGGCGTTCGACCTCTCCCTGGACTCCAGGTTCTAAGAGGACTGCTA
GTTGATGCATCGCTGTGCTCAAGCTGATCGCAGTCTTCATTTTTAAAAGA
AAGGAGAAAATTTGGTTTCAGTCCTGAATGCACTGGGTAAGAAACCCAGA
GGTCACTTTCTCTTTCTTTGTAGCACTCTCTCACTCTCTTAAATAAAATG
AAAGGCTATATTTTTCCCATGGATTAAGTCCAACACAGTAGACCTTTGGC
CAGTTGGGCATCCATTGGAAATTTATTTCCCCCTTGTTTTCCTTGCCCCA
AGGTACCATGTCGCCTGTAATTTGGTCCCTCCACCCTATTAATGCGCCCC
CCCTACTTTTCGCCCTCTTCCTTCTTCCCCGCTTTTCTCCCCCCCCCGTC
TTCTTTGCTCTTTTACCTTCTCCCTTCTCTCTTATATTTCCCTTTTTTTC
TTTCCCCCCCCCTTCTTCTTCCCTCTCTTTTCTTATTCTATCCTTTCTCT
CTCCCGGGCCCTTTTATACTCCCCCTTTTCCCCTTTCTCCTTCTCTCCTC
GCTCTCCTTTTTTACTTCTATTTCGTCTCCTTCCGTCCTTTTTTTTGCCC
CCCCTTTACTTTCCCTTTTTCTTTCTCTCCCTCCTCTCCTCCTTCTCCTC
CTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_l08.g1 MSMg01no459_l08.g1 CHROMAT_FILE:
MSMg01no459_l08.g1 PHD_FILE: MSMg01no459_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:44 2005
         (273 letters)



>mm_chr8_92965121_92965793
          Length = 673

 Score =  497 bits (257), Expect = e-145
 Identities = 269/273 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctcagggtgttgcaagggctgggtcctgatgcaggccatacagcctgctgctctgccc 60
           |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 473 acctcagggtgttgcaagggctgggtcccgatgcaggccatacagcctgcggctctgccc 414

                                                                       
Query: 61  agctcttgctgatctctctaggcgttcgacctctccctggactccaggttctaagaggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 agctcttgctgatctctctaggcgttcgacctctccctggactccaggttctaagaggac 354

                                                                       
Query: 121 tgctagttgatgcatcgctgtgctcaagctgatcgcagtcttcatttttaaaagaaagga 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 353 tgctagttgatgcatcgctgtgctcaagctgatcacagtcttcatttttaaaagaaagga 294

                                                                       
Query: 181 gaaaatttggtttcagtcctgaatgcactgggtaagaaacccagaggtcactttctcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gaaaatttggtttcagtcctgaatgcactgggtaagaaacccagaggtcactttctcttt 234

                                            
Query: 241 ctttgtagcactctctcactctcttaaataaaa 273
           ||||| |||||||||||||||||||||||||||
Sbjct: 233 ctttggagcactctctcactctcttaaataaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)