BAC Information

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BAC

Clone NameMSMg01-459O22
Chromosome8 (Build37)
Map Location 58,692,681 - 58,693,099
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916, Adam29, Glra3, LOC664812
Downstream geneHpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459O22.T7 (MSMg01no459_o22.b1)MSMg01-459O22.TJ (MSMg01no459_o22.g1)
ACCAG545408AG545409
length786823
length of high quality
(start - end)
423 (42 - 464)418 (69 - 486)
definitionCHROMAT_FILE: MSMg01no459_o22.b1 PHD_FILE: MSMg01no459_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:02 2005CHROMAT_FILE: MSMg01no459_o22.g1 PHD_FILE: MSMg01no459_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGACATCTGCATATGTTTAAGTAACTCAGCAAATTGATGCATTATTTAA
GAACAGAAATAGACTTTCATTTTCTCTAAATGGTACTCATTTGACGGGAA
GAAATGTGTTTATTTCAAGATTTTGAAAGAACCAGCTCAGTCAAGAAAAC
TAGGTTTCTGAGTTGAAGAGAAAGATAATCACCAACCAAACTCCCAAGAA
AAAGAAAATTTCCTAAGGAAGAATTAAGTGGTTAAATACAGAGAAAAGTG
TTTCTGGAAACTGAGCAAGTTAACTTTAAATCACATAAAGGAGGAATGAA
ATACAACTAAGAATTGAGAAAAATTGGATTTTTCTGTTCTTAAGCCTAGA
TTCCATTCTTATCTTACTTGTTAGCAGTCTCTAACCACCCTTAGTTTCTG
GATAAATAGCCTAGTGTACATTATTGGTATCTAACAAAATTTATGTTGGT
GCATAGTAAATCTTTAAGGAGAAACATAGAAATTTACAAACATTGAAACA
TCTATTCTCCCCCAAGTCTCTTAAATTGTGGGAAAAGGGGTTTAACAAGG
TTAATAAAAAAACGGTGGGGACCTTTTGGAATGAACATTTTTAATAAAAA
AAAAGCTTGACGGGATTTCTTGATAAAAGTCTTTCTTAGAAATATTTAAG
CAATCCCCCCCTTTTGTACGGACATGCTTTTTTTTAAAACCATGGCGGTT
GCCGTCGTGGTCCCTCTACCCTCTGATTTTCAAAAA
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTATTTAGCTCTGTACCCCATTTTTGATAGG
GCTATTTGGATCACTGGAGTCTAACTTCTTGAGTTCTTTGTATAAATTGT
ATAGTAGCCCTCTGTCAGATGTAGAGAGCAGAGACTGAAGGAAAGGCCAT
CCAGATACTGTCCTACCTGGGGATACATCCCATATACAGTTACCAGACCC
AGACATTATTTTGGATGCCAAGAAGTACATGCTGACAGGAGTCTGATAAA
GCTGTCTCCTGAGAGACTCTGCCAGAACCTAACAAATAAAGAGATGAATG
CTCGTATCCAACCATTGGACTGAGCACAGGGTCTCCACTGAAGCAGTTAG
AGAAAGGAATGAATAAGCTGAAGTGGTTTGTTGCCCCATAGAGGGAACAA
CGATTTGAACCAACCAGACACCCTCCCCCCTCAGAGATTCCAGGGACTAA
ATCACCAACCAAAGAGTACACCTGGGAGTGACCCATGGGTCCCGCCCCAT
TATGTTGNAAGAAATTGACCTTGGTTGGACATCCCTGGAAGGAAGAGGCC
CTTTTGTCCCTGGTGAAGATTTGATCGCCCCCCCGTAACTGTATTATAAT
GACCTGCATTCTTTTTATCTCTTTTTCTCCCTTTTCTTTTTAACTCTCCT
TTTTTCTTTTTCTCTTTTCTCTCCTCTCTTCTATACTTATTTTTTTTTCC
TTTCCTTTCTCGTTTTCCTACTCTTCTCTTTTCTTTTTTTTTATTCCCTC
CTCTTTTTATCTTCTTGTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_o22.b1 MSMg01no459_o22.b1 CHROMAT_FILE:
MSMg01no459_o22.b1 PHD_FILE: MSMg01no459_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:02 2005
         (423 letters)



>mm_chr8_58692477_58693299
          Length = 823

 Score =  748 bits (387), Expect = 0.0
 Identities = 411/419 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagacatctgcatatgtttaagtaactcagcaaattgatgcattatttaagaaca 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaattcagacatcagtatatgtttaagtaactcagcaaattgatgcattatttaagaaca 564

                                                                       
Query: 65  gaaatagactttcattttctctaaatggtactcatttgacgggaagaaatgtgtttattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 563 gaaatagactttcattttctctaaatggtactcatttgacgggaagagatgtgtttattt 504

                                                                       
Query: 125 caagattttgaaagaaccagctcagtcaagaaaactaggtttctgagttgaagagaaaga 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 caagattttggaagaaccagctcagtcaagaaaactaggtttctgagttgaagagaaaga 444

                                                                       
Query: 185 taatcaccaaccaaactcccaagaaaaagaaaatttcctaaggaagaattaagtggttaa 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taatcatcaaccaaactcccaagaaaaagaaaatttcctaaggaagaattaagtggttaa 384

                                                                       
Query: 245 atacagagaaaagtgtttctggaaactgagcaagttaactttaaatcacataaaggagga 304
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 383 atacagagaaaagtgtttctggaaactgagcaagttaactttaaatcatataaaggagga 324

                                                                       
Query: 305 atgaaatacaactaagaattgagaaaaattggatttttctgttcttaagcctagattcca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atgaaatacaactaagaattgagaaaaattggatttttctgttcttaagcctagattcca 264

                                                                      
Query: 365 ttcttatcttacttgttagcagtctctaaccacccttagtttctggataaatagcctag 423
           ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttcttatctcacttgtcagcagtctctaaccacccttagtttctggataaatagcctag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)