BAC Information

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BAC

Clone NameMSMg01-460K11
Chromosome8 (Build37)
Map Location 103,032,714 - 103,033,089
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667531, LOC100042069, LOC436054, LOC100042078
Downstream geneLOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460K11.T7 (MSMg01no460_k11.b1)MSMg01-460K11.TJ (MSMg01no460_k11.g1)
ACCAG545959AG545960
length7142,073
length of high quality
(start - end)
410 (64 - 473)---
definitionCHROMAT_FILE: MSMg01no460_k11.b1 PHD_FILE: MSMg01no460_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:58 2005CHROMAT_FILE: MSMg01no460_k11.g1 PHD_FILE: MSMg01no460_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
TTTTCTCCCAATTTTAGAGAGAAACACACACACACACACACACACACACA
CACACACACACACACACATACACAGAGAGAGAGAGAAAGAGAGAGAACAC
AAACACAAATTTGGGTCAGTAGGGATAGGGAGGTGGATAAATATGAGAGG
AGCTGTGAAAAAGGAACAATATGATACAATATATAAAAATTTATAGATAA
AATTTTAAAAATTACAAAACAAACCAACTTCTCTGCTCCCTTATTTTACA
AATATGTTTTTGGTAACATCAACTATTTTGTAATATATTTGAGGGTAACT
CTTTATAAGTATCAACTAAGATAACCTGTGGTGGTTTTTTTCTTTGCCTG
ACCCTGATGAAACATTCTGGTATGTTTCTATGCTCAGCAATATAATCAAG
CTTTAGAAAGTACGAGGTGATGGTATTAGCTTTATGTACAGGAAATGTTT
TGATCCTTAGCTACATATTACCAATTTCAAGGAGCAACTTCAGAGTGGAC
ACTAAGATAACAGCTCAATTAAATTGATGAATCCCCTAATATTGCGTATA
GCCAGGAAACCCTTAGCAGCATGAACATGTTCTTACTAGGTAATATCAGA
TGATTTCATTGAAGGAAAATCTCTGTAGATGACTTTCCCCATATCTGTAA
GCCATAATTCAATT
GTGAGCGTTAACATATANACATCAGTNTTGTTNTTNNTNNTNNCTGCGNC
NCNCAAGCCCCACCCTCACTCTACACANACGGATGACTTGCGNCGATNNA
AACGCNCGTACGCGCGGACANAGGGACCGCGCTAGCGCTCGCGGCAGCAT
CAGTGAGGTGACTGTCGATCAAGAGTGCATTACAGCTCCATCGACGCGAG
ACGCTGCGTCGCGCTCTTTGCCTACACATATATCATACATCATCTNCTCT
CGTCNCACCTCAGCTCTNCTGCTCCACGNCTATNTNCTCTATCGCTCAGC
CCGCCGCTACGCTAGACGCACAACGNNGCACACCAGCCACGAGCAAGAGA
CGTGGGAGCGGAGCGTNGCACGACGNCTACGACAGCGGGCACTGACANGA
GCACGCGGACAGACGATATCAGCGAGTANAGATCATATATNAGGAAATCA
CGATNATCATGNAGACATCAGTACATANACACGTCATAGCAGCACAGACC
TGAGTCATCTACTACAACACTGATTGTCGTCGCAAGCGATGCGATGTGTC
GTCTCGTNTCNTTACATGACCTCCTCTCAATGTGGTGGACCGCGCTCGTC
TCGGCGTAATGGCGNTGCGTNCTATCCTCGGTGCGTCTCTNAGTTCTATC
GCAGCAAGACGGCTATGACTGCTGATCGCTCCNTACTCTCTTGCCTCGCA
CTTCAGNCCGTGCGCCCCTCGCGTCCGATATCGCACGCCGCTCGCGTCTA
CTCTCACACGCCTGAGCGCTGTTGTAGTGGGCTGCGTCNCGTCTCTCATC
CCTATGACANCAGCATCGCAGATGAGACTGAACGCGCGGCGCGCCAGCAC
ACGCGTGGCGCCGTGCGAGCGTAGTGGGCGCAATGTGTACTATCGTCCTG
TGTCGTCGTCGCGTCTGCTGTCTTCTGCATATGAGACGCACCGTCGTACG
ACACTTCGTGTTCTGACTTATCGATTGGACAGTAGACAGTCTATCGGTCT
GCGGTTCTGCGTGCTCACATATGTCAATGTGTATACTCGCGTCGTGACGT
GTACGACGCGCTGCCGTCGATCGCACGCTGCGGTGTGCGCATGCTGCAGT
GAGTAGTNATGTNATTTNTAAGNATACACGGCAAGCNGCCTGCCTACAGT
ATCTATGCATATTCGCTTCATATGCGNCGCTCGTTATACGCTGCTGCTCA
CGTCCGCNACNTGTCATCATCTCTATATCGCACTACGGTCCGCGACCGAC
TACCGATCTCATACAATACTCGNCGCGATGCGCTGCTGCGACTATGACTA
TAACTGANACNATAGACGTCTACAGATGTCGCGATGANTTGCCAGCAGCG
CGCACGTGCGATATCGTCTGTAGCATGTTGCTGTACGTAGCANCGAGGAT
CTGCGAACGTACGTNCAACTCCGCTGCATATCTGCTCGTCTCGTGATACG
TGCGTGCGNCGNTAGTGCACGACGTATNTGATATGAGTCGCGAGTGCACA
CTAGTCGCTGTCATATCNNATATAGTGTGTCATGATACTGCAGNATGNTA
ATGTGTCTGTAGTCCTGTCTGCCTGTCAGCTGAGCTTGAGCTGATGCTGT
GTGCACTGCGCGTGACGGCNCGTATGATGGGATGATGANNACGTGTCGTT
ATCNACCGAGCAGGCNACAAGNTATNCAGAGGATACNGCAGCAAGACCNT
AGATGCGNTACATCCGACGACGTTGANTTTGCATGTTNNTTCAGTGATCG
ACATCCCATGCCGTAGCGTCACGACGCGTCAGCAGCTACTCTACTCATCC
GTCGCGTACTGTAGCGCGACGCTGTATNCAGCNACNGNNGGGCGTCGTGN
TTNGATCNACGATGGNCTGATATGANGATAATGCAGCTAATAGAGCAGCA
NGATACNCACGTCATGTACCGTCAGCTGTNCTATCATCGGCGTGACCNNG
CGCGCNTACTTNCTGTCGTTGTCGATGTTCGTCNCATCATGCGACGCTGC
TGTGTGATGTTTGGNCACAGCAGACTANTGGTCGGAGTNCGAGNCTTTAT
ACGAGTATGCAGACGCGCCGCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_k11.b1 MSMg01no460_k11.b1 CHROMAT_FILE:
MSMg01no460_k11.b1 PHD_FILE: MSMg01no460_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:58 2005
         (410 letters)



>mm_chr8_103032313_103033122
          Length = 810

 Score =  681 bits (352), Expect = 0.0
 Identities = 370/376 (98%)
 Strand = Plus / Minus

                                                                       
Query: 35  acacacacacacacacacacatacacagagagagagagaaagagagagaacacaaacaca 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 acacacacacacacacacacatacacagagagagagagaaagagagagaacacaaacaca 718

                                                                       
Query: 95  aatttgggtcagtagggatagggaggtggataaatatgagaggagctgtgaaaaaggaac 154
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aagttgggtcagtagggatagggaggtggataaatatgagaggagctgtgaaaaaggaac 658

                                                                       
Query: 155 aatatgatacaatatataaaaatttatagataaaattttaaaaattacaaaacaaaccaa 214
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 657 aatatgatacaatatataaacatttatagataaaattttaaaaattacaaaacaaaccaa 598

                                                                       
Query: 215 cttctctgctcccttattttacaaatatgtttttggtaacatcaactattttgtaatata 274
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 597 cttctctgctcccttattttacaaatatgttcctggtaacatcaactattttgtaatata 538

                                                                       
Query: 275 tttgagggtaactctttataagtatcaactaagataacctgtggtggtttttttctttgc 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 537 tttgagggtaactctttataagtatcaactaagataacctgtggtggtttttttctttgt 478

                                                                       
Query: 335 ctgaccctgatgaaacattctggtatgtttctatgctcagcaatataatcaagctttaga 394
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 477 ctgaccctgatgaaacattctggtatgtttctatgctcagtaatataatcaagctttaga 418

                           
Query: 395 aagtacgaggtgatgg 410
           ||||||||||||||||
Sbjct: 417 aagtacgaggtgatgg 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)