BAC Information

Click to search

BAC

Clone NameMSMg01-461H02
Chromosome8 (Build37)
Map Location 102,605,877 - 102,606,038
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531, LOC100042069, LOC436054
Downstream geneLOC100042078, LOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461H02.T7 (MSMg01no461_h02.b1)MSMg01-461H02.TJ (MSMg01no461_h02.g1)
ACCAG546564AG546565
length761762
length of high quality
(start - end)
166 (75 - 240)221 (74 - 294)
definitionCHROMAT_FILE: MSMg01no461_h02.b1 PHD_FILE: MSMg01no461_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:02 2005CHROMAT_FILE: MSMg01no461_h02.g1 PHD_FILE: MSMg01no461_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGC
GGAATTCTATCATTTCCACAGAGTGAAAAACCATTAGAGGAATATAGTTT
CTATTGGTATTTTAGTCTACTAGAAAGGTACATTCCAAATTAACATGCTT
ATGAATATCTAGAAGTGTTGTGGAAAAATCTGATTGGTTCGGTCTGGGAA
ACATCCTATAATTATGGACTTGCAACAAGTACCTAGATGAGGAATAGTAT
TGTTGATACACAAATCACACATTTAATGGAAAAGAATATAAAAACTACTC
TCCTCCTATTATAACATCTTATTATGAAGCAATTTGTAGACTAAGAAGAA
TCAATATGTAAATATAGATATATTAAACCATCAACTTCAAAGAAAAGTTA
TCCTTGTGAGCATGAATTACCAAATATTGTCATTGATTACTAGTGAATTT
AATGATAGCTTTATTTTTCAACTTATACCATAATCTTACACTACTACGAT
TTTTGCCTTTATATTAAACAGTATTAGCATCATTTTGCTAATTGTCATAC
TTTTCAGCCTTTATTGAACTATTACTTTCTTATATATACCTTTTACTGCT
TGATTTCCGTTTGTTGCTTAATACCTTCTGGAACCTTATCCGTGTATTTA
TTTCCTCCACACCCTCCTCTCCTGGCCAGAATATCCACCCTTATATCCTT
CTCCTCCAATATTGGTAACCCATGATTATTAACTTTCTCTGGCTCCTACA
TTTTTTATCTN
TCAATGATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTAATGGCCAAGAAACACTTAAAGAA
ATGTCCAACATCCTTAGCCATCAGGAAATTGCAAACTAAATGAATCTAAG
ATTTCATGTTATTCCTGTCAAAATGGCTAAGATCAGAAATACAAGTGATA
TCTCATGCTGGTGAGGCTATGGATCAATATGAATACTCCACTTCTGGTGT
TAGTGAAAACTTGTACAACCGTTTTGGAAGTCAATACTGTAGGTTCTCAG
GAAAATTGGAAATCTTTCTATCTATAGATCTAGCTATGTCACTCCTTGTT
ATATACCCATAGGACCCTCCACCATACCAAAAATACATTATCTCAATTGT
ATAAGCTTTATCTGTCGTACCCTCAATCACGAAATCAACCTATATACTCT
CTATTACCGAATGTATACAGAAAAACTGTTAAATTTACCTAATGGAGTAT
TACCTGGCTATTTTAACTAATGTCATAGAGAAAATTGTATCCCACAATTA
TAATTATTCCAGATTCTTCTGAATGAACATAACTCTTACCCCCCTATTAT
ATTTTACCTGCTCCTGTATTTTCTCTCTTAATTCGTATACTACCTTCCTT
TCACGCTTGTTTTCTCTTCTTTCTCCCACTTTTCCCCCTTTCTATCTTAA
TCTCTTGTTCTACTTTGCATTGTTTCTTTTTGGTCTTATACCACCTCTAC
TCCCTATCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_h02.b1 MSMg01no461_h02.b1 CHROMAT_FILE:
MSMg01no461_h02.b1 PHD_FILE: MSMg01no461_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:02 2005
         (166 letters)



>mm_chr8_102605677_102606242
          Length = 566

 Score =  290 bits (150), Expect = 3e-83
 Identities = 159/162 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaaaaccattagaggaatatagtttctattggtattttagtctactagaaaggtacatt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 362 gaaaaaccattagaggaatatagtttctattggtattttagtcaactagaaaggtacatt 303

                                                                       
Query: 61  ccaaattaacatgcttatgaatatctagaagtgttgtggaaaaatctgattggttcggtc 120
           |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 302 ccaaatgaacatgcttatgaatatctagcagtgttgtggaaaaatctgattggttcggtc 243

                                                     
Query: 121 tgggaaacatcctataattatggacttgcaacaagtacctag 162
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgggaaacatcctataattatggacttgcaacaagtacctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)