BAC Information

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BAC

Clone NameMSMg01-461H08
Chromosome8 (Build37)
Map Location 91,674,489 - 91,820,110
singlet/doubletdoublet
Overlap geneEG625801, EG384862
Upstream geneHeatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985, Sall1, LOC100041089
Downstream geneTox3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461H08.T7 (MSMg01no461_h08.b1)MSMg01-461H08.TJ (MSMg01no461_h08.g1)
ACCAG546576AG546577
length763747
length of high quality
(start - end)
417 (50 - 466)341 (76 - 416)
definitionCHROMAT_FILE: MSMg01no461_h08.b1 PHD_FILE: MSMg01no461_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:04 2005CHROMAT_FILE: MSMg01no461_h08.g1 PHD_FILE: MSMg01no461_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,819,697 - 91,820,110)(91,674,489 - 91,674,829)
sequence
CCCTCTCTAAATTTGTGNGCGCTATACGACTCACTNATTCGAGAGATCCG
CGGAATTCAAGCTTGTCCGAGATAAACTCTCACATTAGAGGTTGGGGAAT
AAAAGATGCTTGGAAGCATCAGTGTTAGATCAATGCTGTTATTAATATGA
GGCTTTCCTGGGAGCAATTATGACTGTCAGTCACTGGGCATAGCCGGACA
TTGAAAGAAGAAATTAAAAACCTAAAACGATACAGGGCAGGTATAGGATT
GACAGGTGCAGGCCAATGGTATGCCAGAGCTGGAAGAAGGGATGTTTAAG
TTCAAAGGTCATGAGAACCATCTTTAGACAGGTCAACAGAGGTAACGTGG
CACTGTTCCTGGGACTCCGTTAAAAACAAATCCTAAGGGCTTAACTTTAG
AGTGCTTGATCCTGAATAACTGAAAGGACCCCAGATGCCTTCAGCTCATG
TGAGCATGAAAAGCTACATTCATCAAGTAGCCCATAGGATGGCCACGGCC
ATTGTCAGTGTACTTTGAAATCCTACCGCAAAGCAATGTTCACTGAGGGG
AATGGTATTGCCATGTGTGCCGGTGTCAATCTTCTTATTCCTTTTTCTTT
CCCTCATTCATCTATCTCCTTCTAATACTATTCTCATATATTTTCTTTCT
TTTTTTGTAGTCACACCGATCCGGCCCGCTTATTTTCTTTACCCCTCTTA
CCCCTTTCTTCTTCTCTATCTTCCCTTTCCTCCTTCTTATCCGCTCACCC
CCTCCTTTTTTTC
TTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGAGTGGTCTTCAGTAGCATATG
GTTGGCAGAGACCCTGGGCCACTTTCTGTTTTCCTTCTGGTCATGACTGA
AGTCTTTCAGGTTCTAGCACAGTCTGCTTTCTAGAAAGGAGTACATGGGC
CTCTATACCACTCACTGTAGGGGGTTTCAGTCTCTGATGTACTTGCAGAG
ACTTTTGGGAGCATGACTTTCTATTAGGAAACACAGGCTGGCACGTTCCA
ATCTCATCAGTGACTTCTATTCTTTCTCCATGAACAAGGGTAAGATAAAT
GCCTTCTCTATTGTTTGATTTCCCTGTCTGCAAAGTGGACATAGTGCCAG
TAGCTACTTTGTTGGGCTATCCTAGCCTGTTTTTTTTTTCTGTTATAAAA
TTTCAGAGACTGAGTAATTTATGACTAGCAGAAGTATCTTGTGACTTATG
TTTCTGTAGATTGATGTTAACCCTGAAGGCAGGTCTTTGATGTCTGATAG
GCTTCCGTGGATGTTACGGCCTTTGTTTCATACATGGCCTTTATATTTTT
TCCTACTTTCCTGTTTTTTTTTTTTTATACAACCTATCCTTGCCCATTAT
CTTTTATCCCCCTCCCCTGTTTCCTCACTCCTACTCTCCCTCATTTTTAC
CATTAAATCTTTTATTGACTCTTTTTCCTTCCCATCCTATTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_h08.b1 MSMg01no461_h08.b1 CHROMAT_FILE:
MSMg01no461_h08.b1 PHD_FILE: MSMg01no461_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:04 2005
         (417 letters)



>mm_chr8_91819494_91820310
          Length = 817

 Score =  770 bits (398), Expect = 0.0
 Identities = 410/414 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcaagcttgtccgagataaactctcacattagaggttggggaataaaagatgcttg 63
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaattcaagcttggaggagataaactctcacattagaggttggggaataaaagatgcttg 558

                                                                       
Query: 64  gaagcatcagtgttagatcaatgctgttattaatatgaggctttcctgggagcaattatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gaagcatcagtgttagatcaatgctgttattaatatgaggctttcctgggagcaattatg 498

                                                                       
Query: 124 actgtcagtcactgggcatagccggacattgaaagaagaaattaaaaacctaaaacgata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 actgtcagtcactgggcatagccggacattgaaagaagaaattaaaaacctaaaacgata 438

                                                                       
Query: 184 cagggcaggtataggattgacaggtgcaggccaatggtatgccagagctggaagaaggga 243
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 437 cagggcaggtataggattgacaggggcaggccaatggtatgccagagctggaagaaggga 378

                                                                       
Query: 244 tgtttaagttcaaaggtcatgagaaccatctttagacaggtcaacagaggtaacgtggca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgtttaagttcaaaggtcatgagaaccatctttagacaggtcaacagaggtaacgtggca 318

                                                                       
Query: 304 ctgttcctgggactccgttaaaaacaaatcctaagggcttaactttagagtgcttgatcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctgttcctgggactccgttaaaaacaaatcctaagggcttaactttagagtgcttgatcc 258

                                                                 
Query: 364 tgaataactgaaaggaccccagatgccttcagctcatgtgagcatgaaaagcta 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgaataactgaaaggaccccagatgccttcagctcatgtgagcatgaaaagcta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no461_h08.g1 MSMg01no461_h08.g1 CHROMAT_FILE:
MSMg01no461_h08.g1 PHD_FILE: MSMg01no461_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:04 2005
         (341 letters)



>mm_chr8_91674289_91675029
          Length = 741

 Score =  644 bits (333), Expect = 0.0
 Identities = 339/341 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgagtggtcttcagtagcatatggttggcagagaccctgggccactttctgttttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgagtggtcttcagtagcatatggttggcagagaccctgggccactttctgttttcct 260

                                                                       
Query: 61  tctggtcatgactgaagtctttcaggttctagcacagtctgctttctagaaaggagtaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctggtcatgactgaagtctttcaggttctagcacagtctgctttctagaaaggagtaca 320

                                                                       
Query: 121 tgggcctctataccactcactgtagggggtttcagtctctgatgtacttgcagagacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggcctctataccactcactgtagggggtttcagtctctgatgtacttgcagagacttt 380

                                                                       
Query: 181 tgggagcatgactttctattaggaaacacaggctggcacgttccaatctcatcagtgact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggagcatgactttctattaggaaacacaggctggcacgttccaatctcatcagtgact 440

                                                                       
Query: 241 tctattctttctccatgaacaagggtaagataaatgccttctctattgtttgatttccct 300
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaacctttctccatgaacaagggtaagataaatgccttctctattgtttgatttccct 500

                                                    
Query: 301 gtctgcaaagtggacatagtgccagtagctactttgttggg 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctgcaaagtggacatagtgccagtagctactttgttggg 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)