BAC Information

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BAC

Clone NameMSMg01-461P10
Chromosome8 (Build37)
Map Location 70,107,497 - 70,278,051
singlet/doubletdoublet
Overlap genePsd3
Upstream geneNpy5r, Npy1r, BC053440, LOC665453, Nat1, Nat2, LOC100041265, Nat3
Downstream geneSh2d4a, LOC665510, 4732435N03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461P10.T7 (MSMg01no461_p10.b1)MSMg01-461P10.TJ (MSMg01no461_p10.g1)
ACCAG546962AG546963
length739830
length of high quality
(start - end)
568 (47 - 614)172 (75 - 246)
definitionCHROMAT_FILE: MSMg01no461_p10.b1 PHD_FILE: MSMg01no461_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:46 2005CHROMAT_FILE: MSMg01no461_p10.g1 PHD_FILE: MSMg01no461_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,277,575 - 70,278,051)(70,107,497 - 70,107,664)
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCTTTATATTTCGATTTTCTTATAAAATTTAAAAATTAAAGCATAG
ATTAAAAGAAGATATACATAGCCTTATCAGTGATTCAGACCTATAACATA
CATTTTTTAACACAGTCTTAAATTAGGAAAAAAAGATGATCCTGTGTTTT
TCAAAGGGCTAAAGTTATAGTAAACCAATGTCACAAGGAAAAAAACCCTT
AGATTATTTATGTAAGGGATTTTATTTATTCTGTATTTCAGTTTAAAACA
CTCAGTCATGACAGTGAATTTTGGCAGCAGGAGCTTGAAGCAGCTTCTCA
TTTTACACTCACAGGAAACGGTGAGCAAGAAAAGCCATTCCTAGTGTCTG
GCTTTTTTCCACTCTGCACTGTCCAGGGTCTCCTGCAGGGGCTAGCCCTC
TCTGCAGTCAAGAAGAGCTTCTCAAAGGAACTGACCCAACAGAGACACTG
CTTCACCAGCAGGCGAGGAGGAGAGCACACCCTGTCAGAATGATAACAGT
ATCACATTCAGTAAAATCTATGTATTGTCCACATTTGACCCTATAGTCTC
CAATAAGAGGAGGCATGAAATAAAAGCAGGGAGTTCAGGAAGTGGAAAAA
GATCTTTATGTTCTTCTAAACAGGGAGATGATAAATACTGCCTACCCAGA
AAATAAGTGGCATCAGTTAATTTGAAAATGAAAATGAAN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTAGCTGCATTGATTTCCAGCTGAA
CTTTAGCTATCTGTCAAGGTTTACCAGGAAACCATAGACCTGTGTTGAGG
AATCAAATTTACTGGTGGGTGAGTGTCCCCAAGTCCTCTACAAGCAAGAA
GCTGAATAGGTGCACGTACACAGGGGGGGGAGGGGGATGATGAGAACTTT
TTCCCTTTCCCCCCCTCTTTTCTTCTTGTCTGCTTCTTTTCTCTTGTTCC
CGCATCGCCCCTTTTTTTTTTTCGCAGCTTCTTTTGCCTAGTTCTCCTCT
TGCTTTTTTTCTCCTTTTTTCTTCTTCCCTTTTTTTTTCCCTCCTTTTTT
GCCTTTTTCTCTTCTTTCACTTCCCCCCCTTTCGCCCCTTTTTTTTTCCT
TTTTCTCCTATTCTTTTTTTTTTCTCCTTTCGTTTTCGCTATTCTCCCTT
TTTATTTTCTTTTCTCTCTTCTCCCTTACGCTTCTTAACTTCATATCTCC
TCATACTTCCTCCCCCCCTATTCCTCGCTCTCCTTTCATCTTTTATTTCA
CTTCCCCTCCCATTCCTTCCCCCCTCTCCATTTTTTTATTTCCCGCCTTC
TCTTATTTTTTGTCCTCACTCCTCTATCCTATACTGTCTCCCATCTCCTT
CCGTGCTACACCTATTTTCTCTTTTTTTCTTATCTTTTCTCCTCCTTTTT
GCCTTCTTCCCTACTCTTCTCCTCTTCTTCCTTTCCTCTCTCTTCTCTTT
CTCCTCTTTCTTTCCTTCCTTATTCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_p10.b1 MSMg01no461_p10.b1 CHROMAT_FILE:
MSMg01no461_p10.b1 PHD_FILE: MSMg01no461_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:46 2005
         (568 letters)



>mm_chr8_70277575_70278546
          Length = 972

 Score =  793 bits (410), Expect = 0.0
 Identities = 459/482 (95%), Gaps = 16/482 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttatatt-tcgattttcttataaaattt-aaaaattaaagcatagattaaaag 62
           |||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 477 gaattctttatattat-gattttcttataaaatttaaaaaattaaagcatagattaaaag 419

                                                                       
Query: 63  aagatatacatagccttatcagtgattcagacctataacatacattttttaacacagtct 122
           ||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 418 aagatatgcatagccttatcagtgattcagacctacaacgtacattttttaacacagtct 359

                                                                       
Query: 123 ta----aattaggaaaaaaagatgatcctgtgtttttcaaagggctaaagttatagtaaa 178
           ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 taaattaattaggaaaaaaagatgatcctgtgtttttcaaagggctaaagttatagtaaa 299

                                                                       
Query: 179 ccaatgtcacaaggaaaaaaacccttagattatttatgtaagggattttatttattctgt 238
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 298 ccaatgtcacaaggaaaaaaaccctcagattatttatgtaagggattttatttattctgt 239

                                                                       
Query: 239 atttcagtttaaaacactcagtcatgacagtg-----aattttggcagcaggagcttgaa 293
           ||||||||||||||||||||||||||||||||     ||    |||||||||||||||||
Sbjct: 238 atttcagtttaaaacactcagtcatgacagtgaaagcaa----ggcagcaggagcttgaa 183

                                                                       
Query: 294 gcagcttctcattttacactcacaggaaacggtgagcaagaaaagccattcctagtgtct 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gcagcttctcattttacactcacaggaaacggtgagcaagaaaagccattcctagtgtct 123

                                                                       
Query: 354 ggcttttttccactctgcactgtccagggtctcctgcaggggctagccctctctgcagtc 413
           |||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct: 122 ggcttttttccactctgcgccgtccagggtctcctgcaggggctagccctctctccagtc 63

                                                                       
Query: 414 aagaagagcttctcaaaggaactgacccaacagagacactgcttcaccagcaggcgagga 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  aagaagagcttctcaaaggaactgacccaacagagacactgcttcaccagcaggcgagga 3

             
Query: 474 gg 475
           ||
Sbjct: 2   gg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 972
Length adjustment: 10
Effective length of query: 558
Effective length of database: 962
Effective search space:   536796
Effective search space used:   536796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no461_p10.g1 MSMg01no461_p10.g1 CHROMAT_FILE:
MSMg01no461_p10.g1 PHD_FILE: MSMg01no461_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:46 2005
         (172 letters)



>mm_chr8_70107297_70107868
          Length = 572

 Score =  248 bits (128), Expect = 2e-70
 Identities = 156/168 (92%), Gaps = 5/168 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   actagctgcattgatttccagctgaactttagctatctgtcaaggtttaccaggaaacca 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 actagctgcattgatttccagctgagctttagctatctgtcaaggtttaccaggaaacca 260

                                                                       
Query: 61  tagacctgtgttgaggaatcaaatttactggtgggtgagtgtccccaagtcctctacaag 120
           ||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||
Sbjct: 261 tagacctgtgttgaggaatcaaatttactggtgggtgagtgtctctgagtcctctacaag 320

                                                           
Query: 121 caagaagctgaataggtgcacgtacacaggg-----gggggaggggga 163
           || ||||||| |||||||||||||||||| |     ||||||||||||
Sbjct: 321 catgaagctgtataggtgcacgtacacagagaatgagggggaggggga 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)