Query= MSMg01no461_p10.b1 MSMg01no461_p10.b1 CHROMAT_FILE:
MSMg01no461_p10.b1 PHD_FILE: MSMg01no461_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:46 2005
(568 letters)
>mm_chr8_70277575_70278546
Length = 972
Score = 793 bits (410), Expect = 0.0
Identities = 459/482 (95%), Gaps = 16/482 (3%)
Strand = Plus / Minus
Query: 5 gaattctttatatt-tcgattttcttataaaattt-aaaaattaaagcatagattaaaag 62
|||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 477 gaattctttatattat-gattttcttataaaatttaaaaaattaaagcatagattaaaag 419
Query: 63 aagatatacatagccttatcagtgattcagacctataacatacattttttaacacagtct 122
||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 418 aagatatgcatagccttatcagtgattcagacctacaacgtacattttttaacacagtct 359
Query: 123 ta----aattaggaaaaaaagatgatcctgtgtttttcaaagggctaaagttatagtaaa 178
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 taaattaattaggaaaaaaagatgatcctgtgtttttcaaagggctaaagttatagtaaa 299
Query: 179 ccaatgtcacaaggaaaaaaacccttagattatttatgtaagggattttatttattctgt 238
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 298 ccaatgtcacaaggaaaaaaaccctcagattatttatgtaagggattttatttattctgt 239
Query: 239 atttcagtttaaaacactcagtcatgacagtg-----aattttggcagcaggagcttgaa 293
|||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 238 atttcagtttaaaacactcagtcatgacagtgaaagcaa----ggcagcaggagcttgaa 183
Query: 294 gcagcttctcattttacactcacaggaaacggtgagcaagaaaagccattcctagtgtct 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gcagcttctcattttacactcacaggaaacggtgagcaagaaaagccattcctagtgtct 123
Query: 354 ggcttttttccactctgcactgtccagggtctcctgcaggggctagccctctctgcagtc 413
|||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct: 122 ggcttttttccactctgcgccgtccagggtctcctgcaggggctagccctctctccagtc 63
Query: 414 aagaagagcttctcaaaggaactgacccaacagagacactgcttcaccagcaggcgagga 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 aagaagagcttctcaaaggaactgacccaacagagacactgcttcaccagcaggcgagga 3
Query: 474 gg 475
||
Sbjct: 2 gg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 972
Length adjustment: 10
Effective length of query: 558
Effective length of database: 962
Effective search space: 536796
Effective search space used: 536796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no461_p10.g1 MSMg01no461_p10.g1 CHROMAT_FILE:
MSMg01no461_p10.g1 PHD_FILE: MSMg01no461_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:46 2005
(172 letters)
>mm_chr8_70107297_70107868
Length = 572
Score = 248 bits (128), Expect = 2e-70
Identities = 156/168 (92%), Gaps = 5/168 (2%)
Strand = Plus / Plus
Query: 1 actagctgcattgatttccagctgaactttagctatctgtcaaggtttaccaggaaacca 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 actagctgcattgatttccagctgagctttagctatctgtcaaggtttaccaggaaacca 260
Query: 61 tagacctgtgttgaggaatcaaatttactggtgggtgagtgtccccaagtcctctacaag 120
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 261 tagacctgtgttgaggaatcaaatttactggtgggtgagtgtctctgagtcctctacaag 320
Query: 121 caagaagctgaataggtgcacgtacacaggg-----gggggaggggga 163
|| ||||||| |||||||||||||||||| | ||||||||||||
Sbjct: 321 catgaagctgtataggtgcacgtacacagagaatgagggggaggggga 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space: 92496
Effective search space used: 92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|