BAC Information

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BAC

Clone NameMSMg01-462D01
Chromosome8 (Build37)
Map Location 126,562,733 - 126,562,976
singlet/doubletsinglet
Overlap geneAK122209
Upstream geneSpg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l
Downstream geneLOC100042530, LOC100042535, Galnt2, Pgbd5, Cog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462D01.T7 (MSMg01no462_d01.b1)MSMg01-462D01.TJ (MSMg01no462_d01.g1)
ACCAG547136AG547137
length759897
length of high quality
(start - end)
244 (78 - 321)221 (74 - 294)
definitionCHROMAT_FILE: MSMg01no462_d01.b1 PHD_FILE: MSMg01no462_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:06 2005CHROMAT_FILE: MSMg01no462_d01.g1 PHD_FILE: MSMg01no462_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAAATCCGCGG
AATTCCTGCTGGTCTTACCTATTAGAGGTAGTTCATGAAAAGAACCCTGA
TCAAAGGTATCAATAGGCTTAGCCCAACACTCAGATTCAACGAAGTGGCA
ATGGTCAAAACATTCAGCAAGCCTCGATATCCTTATCGCTAAAATAGGAT
TACCACGTTCTTTAGAGGCTTACTACGGAGTAAAGCAGCAAACGTTCACC
AAATGCTAGCTGGCCATACTCTCTTCTATGAGATCTGTGTTCCTAGCCTC
TGTATAACATAAACAGCAGCAGATTTTTCTCAAGACTTTCACTTCCTACC
ACTTGAATTATAAACCCAACATATCTAAGCAAGGTAGTGACTTGTTTAAA
TACAGCAGCAGCAGCAGGCGGAGTCATGGGCCTCCTTTGTATATTACAGG
ACCCCACTCAAGAGGAACAAATGTGGTATACAACAACTCAAGTGGCCTGA
AGAGAAGGTCTAAGTATCTGAACTACTATTAAGCAAATTTGTAACAGTGA
CGCTTTCTTTTACTTTAGTTTTGTCAGTTTGCTTTTATTTTTACGGGTTG
CCAGGAACAATGCAGGGACTTAATGTGTATGCTTTCTTTTCTATCCGTCC
GTCCTGCCCACTGACTAGCCCCCAAACTCTTGCTCCCTCTAAAATCTGGG
AATATTGTTACAGATAGGAACTATCTGCTTTGTTTCTGTCCTCTACATTT
GTTATTGAC
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATTGGCAGAGTAACCACCTCACATGC
ATGAAGCCCTGGGTTCTTGCATCCCCAGAGCTGCAGTAACTAGGTGGCAC
ACACCTGTTATCCCAGCAGTTCAGAGGTAGAGACAGGAAGTGCAGAAAGT
TCAAGGTTATCCTTGCCCATTTAGTTCCAAAGCTAGTCTGGGCTACGTGA
AACCCTGTCTCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTGTTTCT
TTTTTTCCTTTTCTTGCTTTTTTTTTTTTCTCCCCCTTTTTTTCCCCCTT
CTTTTTCCTTTTTTTTTTTTTTTCTTTTTTCTGTGTTCCTCGCTTCTCTT
CTTCTCTTCCTTCTCTTTTCCCCCACTATCATTTTTTCTTCTCTCTACTC
TTTCTCATCTTTGCCTTTTTTTTCTTCTCCTTTTTTTTTTTTCTTTCTTT
CTTTTTTTCTCTTTCTCTAATTTTTTTTTTATTATGTTCTTCTCCTTTTC
TCTCTTATCGTCTCTTTATTTATCTTTTTTTTCTAACTTTGCTTCTTACA
TTTTCTCTATCTCCTTCGATTTTCTCTTTTTTCTCTTTATTTTCTTCCTC
TTTTAACTCATTTGTTTTATTACCTCTTATTTTTCCTTCCCCATATTCAT
TTTCTTCTTCCTCGTTTTTTCTCCCTTATCTTCTCTTTTTTCATGCCTCC
CCTTGTTGCTTTTGGTCTTTTTTTTTTCTTCCACCCCCCTCTTGTCTCTT
CTCATTCCTCTTTTTTTTCTTTCTTCTTTTCCCATTCTCTTTTTCTTTAT
GCTTCTCTTCTCCCCTCCTTCCTCCTTCCCCCCTCCTTTCTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_d01.b1 MSMg01no462_d01.b1 CHROMAT_FILE:
MSMg01no462_d01.b1 PHD_FILE: MSMg01no462_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:06 2005
         (244 letters)



>mm_chr8_126562533_126563176
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtagttcatgaaaagaaccctgatcaaaggtatcaataggcttagcccaacactcagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtagttcatgaaaagaaccctgatcaaaggtatcaataggcttagcccaacactcagatt 385

                                                                       
Query: 61  caacgaagtggcaatggtcaaaacattcagcaagcctcgatatccttatcgctaaaatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caacgaagtggcaatggtcaaaacattcagcaagcctcgatatccttatcgctaaaatag 325

                                                                       
Query: 121 gattaccacgttctttagaggcttactacggagtaaagcagcaaacgttcaccaaatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gattaccacgttctttagaggcttactacggagtaaagcagcaaacgttcaccaaatgct 265

                                                                       
Query: 181 agctggccatactctcttctatgagatctgtgttcctagcctctgtataacataaacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agctggccatactctcttctatgagatctgtgttcctagcctctgtataacataaacagc 205

               
Query: 241 agca 244
           ||||
Sbjct: 204 agca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)