BAC Information

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BAC

Clone NameMSMg01-462L20
Chromosome8 (Build37)
Map Location 128,182,959 - 128,394,306
singlet/doubletdoublet
Overlap gene4933403G14Rik, 2310079N02Rik, E330039K12Rik
Upstream gene2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1, Sipa1l2
Downstream geneBC021891, Kcnk1, Slc35f3, LOC668434, 1810063B05Rik, EG619653, Irf2bp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462L20.T7 (MSMg01no462_l20.b1)MSMg01-462L20.TJ (MSMg01no462_l20.g1)
ACCAG547556AG547557
length746767
length of high quality
(start - end)
474 (76 - 549)286 (78 - 363)
definitionCHROMAT_FILE: MSMg01no462_l20.b1 PHD_FILE: MSMg01no462_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:51 2005CHROMAT_FILE: MSMg01no462_l20.g1 PHD_FILE: MSMg01no462_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,393,833 - 128,394,306)(128,182,959 - 128,183,244)
sequence
NNCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAACAGCGC
GGAATTCCAGGTTGTTCCACCAGAGCCCAGCTCAGCTTCAGCCTCTTTGT
TCCCTTCCGGGGCTGGTTGGTTCTTGTCACCCCTACACCACCAACCTCCC
CCCTCATGTTTCTCTGAGTGCTCCAGCCTCTGCTTTGACCCTGAGGAGAA
CTAGTTGACCTGAGACCAACCCAGCCTCAGGCTGATGGAGACCTGGTGGT
GTCACTGAGAAGGTCATTCCAGAGAGTGGGCTCTCTCCATCCCTCAGATG
TTTCAGAGGAGGTGGGAATTTTTCTTGACATCCCTAATAAACAGTCCTGG
AATAAATGTTTATTAATGCAGCAGAGAGCACTGGTCTCATGATCCTTTAA
TGCTGCAGCCGCCACAGCCTACAGGAAGAGGATAGGCCCTGGAGGAGCAG
CTCCATTTGAGGTACAGTCTTGCTAATCACAGGCTTGTCCCTCCAGGCTG
CCCAGGAGCCAGCAGAGGTGACAGTGTGTGCTTGTGATAAGGGCCCAGCC
AAATCTAGTGAAAATAGTTTCTTGAGAGGGAAGCTGATTTGTTGTTTGAG
TCTTTGTTAGATAATGATGAATGAATGCTGGACCTTCCTCACCATTGCTG
TTGGAGCCAAGCCTTATCTATGGTAAGGTTGGCAAGCCTTCTTGCTACCT
TAATGTTAGACTCATGTCAATTTCCTCTTCTCAAGCCCCTCCGATN
TTTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCCCTTGTCTGTATGGCGCA
GTGTCCTTTGGACAGCAGCTCCTGGAGGAGGAGCTGTGGTTTTCATCAGG
TGCCTGTCTCCTGCCAGTCCTTTGTGAATATTCAAGCCCCTTTGCTGTCT
AGACAGGGTTACCAAGAGTATCTGGTGGACTCGAGAGGGCCAGGGTAGAG
CTGTGGGGATTGCTCGCTCAGTAGAGAGCTTGCCTTGCAACGTTGAGGAA
CTGAGTTTGATCTAAAACCTGTTGATTTTTTTTAAGTGTTTGTAATCCTG
CACCAATGAAGCAGAACGCAACAGATCCCCAGCCAGTCTACCCTATTTGA
TGAGTTTCAGGGTTAAAAGAAAAGATGGAAGGTACCTGAGGAAGGACACA
CAAAAATGGTTTACTGGCCTCAGTATACACACATGCTCGCGCGCACACTC
ACTCTCACACTCACATTCACTTCCTCACTTCCTTGTGTGCGAGTATACCT
ACATCACTATACTCCTATTTTTTTTATATTGTATACGCTACACTTATTTT
AATATTCCCGCATTACGGCCTCCATCAAATTGTTTTACCTGGTGAAATTC
TCCGTTTGTTCTTTGCTCATCCTTTTCACGTATCCCTTTTCCTATTTTCC
CTTTCCTCCCTCTATTTTTTGTTGCCTCTCATTTTATTCGTCTTGTGCTC
ACCTCTTATTTCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_l20.b1 MSMg01no462_l20.b1 CHROMAT_FILE:
MSMg01no462_l20.b1 PHD_FILE: MSMg01no462_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:51 2005
         (474 letters)



>mm_chr8_128393633_128394506
          Length = 874

 Score =  862 bits (446), Expect = 0.0
 Identities = 467/474 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccagctcagcttcagcctctttgttcccttccggggctggttggttcttgtcaccccta 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 674 cccagctcagcttcagcctctttgttcccttccggggctggttcgttcttgtcaccccta 615

                                                                       
Query: 61  caccaccaacctcccccctcatgtttctctgagtgctccagcctctgctttgaccctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 caccaccaacctcccccctcatgtttctctgagtgctccagcctctgctttgaccctgag 555

                                                                       
Query: 121 gagaactagttgacctgagaccaacccagcctcaggctgatggagacctggtggtgtcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gagaactagttgacctgagaccaacccagcctcaggctgatggagacctggtggtgtcac 495

                                                                       
Query: 181 tgagaaggtcattccagagagtgggctctctccatccctcagatgtttcagaggaggtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgagaaggtcattccagagagtgggctctctccatccctcagatgtttcagaggaggtgg 435

                                                                       
Query: 241 gaatttttcttgacatccctaataaacagtcctggaataaatgtttattaatgcagcaga 300
           |||  |  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gaacgtcccttgacatccctaataaacagtcctggaataaatgtttattaatgcagcaga 375

                                                                       
Query: 301 gagcactggtctcatgatcctttaatgctgcagccgccacagcctacaggaagaggatag 360
           |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 374 gagcactggtctcatgatcctttaatgctgtagccgccacagcctagaggaagaggatag 315

                                                                       
Query: 361 gccctggaggagcagctccatttgaggtacagtcttgctaatcacaggcttgtccctcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gccctggaggagcagctccatttgaggtacagtcttgctaatcacaggcttgtccctcca 255

                                                                 
Query: 421 ggctgcccaggagccagcagaggtgacagtgtgtgcttgtgataagggcccagc 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ggctgcccaggagccagcagaggtgacagtgtgtgcttgtgataagggcccagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no462_l20.g1 MSMg01no462_l20.g1 CHROMAT_FILE:
MSMg01no462_l20.g1 PHD_FILE: MSMg01no462_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:51 2005
         (286 letters)



>mm_chr8_128182759_128183444
          Length = 686

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttccccttgtctgtatggcgcagtgtcctttggacagcagctcctggaggaggagctgt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttccccttgtctgtatgacgcagtgtcctttggacagcagctcctggaggaggagctgt 260

                                                                       
Query: 61  ggttttcatcaggtgcctgtctcctgccagtcctttgtgaatattcaagcccctttgctg 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttttcagcaggtgcctgtctcctgccagtcctttgtgaatattcaagcccctttgctg 320

                                                                       
Query: 121 tctagacagggttaccaagagtatctggtggactcgagagggccagggtagagctgtggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctagacagggttaccaagagtatctggtggactcgagagggccagggtagagctgtggg 380

                                                                       
Query: 181 gattgctcgctcagtagagagcttgccttgcaacgttgaggaactgagtttgatctaaaa 240
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 aattgctcgctcagtagagagcttgccttgcaatgttgaggaactgagtttgatctaaaa 440

                                                         
Query: 241 cctgttgattttttttaagtgtttgtaatcctgcaccaatgaagca 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgttgattttttttaagtgtttgtaatcctgcaccaatgaagca 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)