BAC Information

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BAC

Clone NameMSMg01-463J12
Chromosome8 (Build37)
Map Location 33,145,428 - 33,145,964
singlet/doubletsinglet
Overlap genenone
Upstream geneDusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340, Nrg1
Downstream gene2010007E15Rik, EG666589, EG546052, LOC100042715, LOC628408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463J12.T7 (MSMg01no463_j12.b1)MSMg01-463J12.TJ (MSMg01no463_j12.g1)
ACCAG548210AG548211
length7391,836
length of high quality
(start - end)		537 (75 - 611)---
definitionCHROMAT_FILE: MSMg01no463_j12.b1 PHD_FILE: MSMg01no463_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:04 2005CHROMAT_FILE: MSMg01no463_j12.g1 PHD_FILE: MSMg01no463_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGATCCG
CGGAATTCTTGGCTACTCCTCCAGTACCATGACTGCCTGTACCACGCAAC
CATCTCTCCCTCCATGATGATAATTAACTCAACCTCTAAAACTATAAACC
AGAACCAACTAAATATTTTCCTTTATAAGAGTTATCATGTTCATGATGTT
TCCTCACAGCAAAAGAAACCCTAACAAAGAGTATTTTAAGCTATTGCCTC
TTTAAGGTAAGCACTCTTCTCATATATATTTATATATAATGGTGTAACCT
AATAAAGTGTCAATTTTTAATCTGTGGTAAGACCCATCAGGTAAATTCAT
TAGGAATTAGAGAATGTGTCTTGTTTACAATAAAAACAACCCACAAAGCA
AACAAGTACTAACTGCAAAACCATCCCATCTCATTTATTAAAGCAGACAG
ATCCTTTTCCTTAAAAGTTTGGATATAACCTGGTGTGGTGGTTTGAATAT
GCTTGGCCCATGGAGAGTGGCACTATTTGGAGGTGCGGCCTTGTTAGAAT
AGGTGTGGTCTAGTTGGAAGAAGTGAGGTCTCCTAGTGCTCAAGCTCTGC
CTAGTGCGTAAGAGAGAGTTTCTTCTTGGCTACCTTTGGATCAAGTTAGA
ATTCTCAGTTCTTCCAGTATCATGACTTGCACACTACCATGCTTCCCACC
ATGATGGTAATGGCTTGAAACTCTGAAAAAAAATGATTT

TGGAGTTGAATANATAGAGCTGTGGATTATATCNTACGTTTNATATCCNA
AACAACATATACACAGTNACANCAACNACACAGNGACTCGCTCCCTATTC
ATATCTAACTACTNTATAGAACTAGCGAGTCNAGCNTAGCACTNACACAC
ACCACGTGTACTACATATACTCCGCNACATCATACGTACGTTCTCTACTA
CCAGCGCGTCATACACAGACGCGTAGCACTCGTCGATGCGCGCGCNCACT
CTAGAGGCGACGATCTATCAGCACGACACGCGCCATCAAGGNANGAGATG
TTCATCTNAGATGTTGTAGTAGAACCGTATCACTATAGNAGNTCGTCCTA
NCGCTATATATCGCTATGTCTCGCTCATCGTATTACTANCACTCTATGAC
AACTANCTCGTCTTCTACTGCAGTNCTCCAGCACGACTACAGCACGCATA
GTAGAGATCACATACCACACGTGACACGTGCTGCACACACGTATCATTAC
TATCTACGCNCAAANCACGCATCGAGTCGACACCATACATACTACTACTA
TACGTGACTAGTGCTCCATCGTGTACGCACGNAGANGCAANNAGTAGACG
CTGAATCATACACTCAGCACCNACCATACATGTTTCATCGCGTANGCTAC
GCGCTGCTCTACTCGCTACGACGCGCGTATCACGTAGTAAGTNGCGTGAG
AAGGTTAATGAATGTCATTGACGATGCNGTGATACAGAGAGTTCATATAT
ATATCGTCATGTGCACTCTCTCTATCACTCTGCATCCTACACACTACTGT
TCTCAAGATTCTCACGTGTCTCTGTGTTATNATGCGTTAGTCTTCTATCA
CTGTCCTGTCACTCANTACCACTACTCAATAATCATCGACAATACATCNT
AGCCATCGACCTATTTCACTTNCAGTCCTCTGACTATCTCTATTCCTATT
CAACGAGTACGCCCTCCACATCGACAGTATCACACATACGCTCTGCCAGA
CACTGGCGTCAACCATACATAGGACGTGGCGCATGGTCGTATGCGAATTA
CCGATTCTGCCATGTACATGAGCTGCCNGCGATTCTCATCTCCATATACG
CTTCGCTCCTTGTCTCTCTCTGACTCCACGGATCGTCGCCACTGCGAATG
TACATAATCTTACTCGTGATATTATATCTGCGTCGTGACATCCCTCCTCG
NNGCGCTGCTGCGGACGATAATCACTACGCGATCACTGAGGCGATCGACA
CGCGCCACGTCTCGCCTATCTCACGCTCTCTGACTGTATATCTCACTGCT
CTCGCGCGCGTCGTCGNCGCTCGCATTCACGCTCGCCACGCTCTATGCGT
CCTCTGCTCTATCGACACAGTATAGGATATCGAACAGCAGTCCGCAATGC
AGACTAGCTTCTCCACTCACGATNCAGACGAATACGTCGAGTCTGATGAG
AGTGTGTGCTCAAGTATACGNTCATCGATCTGACTTCTCGCGATGATCAT
GATTTGTTCTACTGACGCACACTCTGGCTCTTATGCGATCTCGCTATCTA
TCTATACGTCCACGACATGCGGATCTATCATAGTGCAGAATCTAAGACGA
GATAGNCTCNTGCACAGTCGTGTACTCGTGTGTGTATACACAGACANGAC
ACTCGTGTGAGAGTGTGAACGCTGTGGTGTGTCATGTTATGCATGACTAC
TATCGTCTATATGATACTATATGAGCTATATGACTCGCTACGCTGATGAN
ACGACTGTACGTCACGCTATACATGATCTATCTTACGNATATGTATACTC
ACATACCGCTCGTCTAGATGNAGTCTACGNTGCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_j12.b1 MSMg01no463_j12.b1 CHROMAT_FILE:
MSMg01no463_j12.b1 PHD_FILE: MSMg01no463_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:04 2005
         (537 letters)



>mm_chr8_33145228_33146164
          Length = 937

 Score = 1038 bits (537), Expect = 0.0
 Identities = 537/537 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taccatgactgcctgtaccacgcaaccatctctccctccatgatgataattaactcaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taccatgactgcctgtaccacgcaaccatctctccctccatgatgataattaactcaacc 260

                                                                       
Query: 61  tctaaaactataaaccagaaccaactaaatattttcctttataagagttatcatgttcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaaaactataaaccagaaccaactaaatattttcctttataagagttatcatgttcat 320

                                                                       
Query: 121 gatgtttcctcacagcaaaagaaaccctaacaaagagtattttaagctattgcctcttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgtttcctcacagcaaaagaaaccctaacaaagagtattttaagctattgcctcttta 380

                                                                       
Query: 181 aggtaagcactcttctcatatatatttatatataatggtgtaacctaataaagtgtcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtaagcactcttctcatatatatttatatataatggtgtaacctaataaagtgtcaat 440

                                                                       
Query: 241 ttttaatctgtggtaagacccatcaggtaaattcattaggaattagagaatgtgtcttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttaatctgtggtaagacccatcaggtaaattcattaggaattagagaatgtgtcttgt 500

                                                                       
Query: 301 ttacaataaaaacaacccacaaagcaaacaagtactaactgcaaaaccatcccatctcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttacaataaaaacaacccacaaagcaaacaagtactaactgcaaaaccatcccatctcat 560

                                                                       
Query: 361 ttattaaagcagacagatccttttccttaaaagtttggatataacctggtgtggtggttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttattaaagcagacagatccttttccttaaaagtttggatataacctggtgtggtggttt 620

                                                                       
Query: 421 gaatatgcttggcccatggagagtggcactatttggaggtgcggccttgttagaataggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaatatgcttggcccatggagagtggcactatttggaggtgcggccttgttagaataggt 680

                                                                    
Query: 481 gtggtctagttggaagaagtgaggtctcctagtgctcaagctctgcctagtgcgtaa 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtggtctagttggaagaagtgaggtctcctagtgctcaagctctgcctagtgcgtaa 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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