BAC Information

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BAC

Clone NameMSMg01-463O08
Chromosome8 (Build37)
Map Location 69,228,615 - 69,228,855
singlet/doubletsinglet
Overlap geneNpy1r
Upstream geneMarch1, LOC100040986, 1810029B16Rik, Tktl2, Npy5r
Downstream geneBC053440, LOC665453, Nat1, Nat2, LOC100041265, Nat3, Psd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463O08.T7 (MSMg01no463_o08.b1)MSMg01-463O08.TJ (MSMg01no463_o08.g1)
ACCAG548440AG548441
length765745
length of high quality
(start - end)
120 (129 - 248)241 (76 - 316)
definitionCHROMAT_FILE: MSMg01no463_o08.b1 PHD_FILE: MSMg01no463_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:29 2005CHROMAT_FILE: MSMg01no463_o08.g1 PHD_FILE: MSMg01no463_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTACTCATAATTTGCGGCGGAAAAACGAATACTACTGCAAAAAGGGCGC
GTGAATCTACATCTACCCCCAAAGGCAGACAGGAGGAAGCTGTTTTCTGC
ATTGGGTGATGTTTGAGCTTATATAGGAGACCTCAAAGACACCCTCTAAA
GTGACACACTTCCTCCAACAAGTCCATACACCTAATAGTGCACTCCCTAT
GGGCCAAGTATTCAAACGCATGACTCTATGGCGCCATTCCTAATCAAACC
ACCACAGTGCCTCTTACATCTTTTTCAAAAAAAATCTCTTAGAAATGTCA
CAAAAAGGAACACTGGTCTTTGTTTTTTGATTTAAAGGACAGCAATGTAC
TCGTAAGGGAAAAAAATTCACAGAACTCCTAGCTATTAAATTTGTCTTTG
CTCTAACTAGTATCTTCTCCATTATATAAAAAGTACGGACTCGTAGAGTT
TTGTTTCAATCATAATACCTGCCTATGTTACAGGTATGGTACAATTTCTT
ATTAGAACCTATAAAATATAAGGCCCTAATCCCAATTATTCTTGTAATCC
TTACTAACAATTGCTGTTCAATTTACCCATTATTGATTAGCACGTTCAAT
CTACTTTCATGTTATCCAGTCTAACATGCCACACATCCCTTTCTCATACA
GGCCCTCCTTTACCCAATTTTCTGCGTGCGATAATATAACACGGTCTTTT
ATTTATAAACCCAACCGCTCCTTCATAATCTCTTCTACCAGCAATCCATC
TCACTTATACACTTT
NTTACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCCTTTCCTTCCTTCATAGATATA
CATTCGCTTGAAAAGGAGAAACAACATGATGGACAAGATCCGGGACAGTA
AGTACAGGTCCAGTGAGACCAAGCGAATCAACATCATGCTGCTCTCCATT
GTGGTCGCCTTCGCCGTCTGCTGGCTGCCCCTTACCATCTTCAACACTGT
GTTCGACTGGAACCACCAGATCATTGCCACCTGCAACCACAATCTGCTGT
TTCTGCTCTGTCACCTCTTTTTTTTTGATCTCCACCTGCGTCAACCCCAT
CTTTTATGGATTCCTGAACAAAAATTTCCAGAGAGACTTGCAGTTCTTCT
TCAACTTTTGTGACTTCCGGTCTCGAGACGATGACTACGAGACCATAGCC
ATGTCTACCATGCATACGGATGTGTCCAAGACGTCTCTGAAGCAGGCTAG
CCCAGTCGCATTTAAAAAAATCAGTATGAATGACAATGAAAAATTCTGAA
GCTGCTCAGAGCATATGGTCCCCAGGCCATATCTGTGGAAAAACAAGCAC
AGCCTGCCGCATGCTTTTTTTTACCTATGCTCCCGGGGGAAACGTAATGA
AGTGCGTCTTGTAAAGCCCTGGTACATCTTGTGTTCGGGCTTGACCTGCC
TTTTTGAGTTTTGCCCCTGTAATACCTTATAAATTCCTACTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_o08.g1 MSMg01no463_o08.g1 CHROMAT_FILE:
MSMg01no463_o08.g1 PHD_FILE: MSMg01no463_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:29 2005
         (241 letters)



>mm_chr8_69228415_69229055
          Length = 641

 Score =  466 bits (241), Expect = e-136
 Identities = 241/241 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   accctttccttccttcatagatatacattcgcttgaaaaggagaaacaacatgatggaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accctttccttccttcatagatatacattcgcttgaaaaggagaaacaacatgatggaca 260

                                                                       
Query: 61  agatccgggacagtaagtacaggtccagtgagaccaagcgaatcaacatcatgctgctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatccgggacagtaagtacaggtccagtgagaccaagcgaatcaacatcatgctgctct 320

                                                                       
Query: 121 ccattgtggtcgccttcgccgtctgctggctgccccttaccatcttcaacactgtgttcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccattgtggtcgccttcgccgtctgctggctgccccttaccatcttcaacactgtgttcg 380

                                                                       
Query: 181 actggaaccaccagatcattgccacctgcaaccacaatctgctgtttctgctctgtcacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actggaaccaccagatcattgccacctgcaaccacaatctgctgtttctgctctgtcacc 440

            
Query: 241 t 241
           |
Sbjct: 441 t 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)