BAC Information

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BAC

Clone NameMSMg01-464G20
Chromosome8 (Build37)
Map Location 47,807,271 - 47,954,513
singlet/doubletdoublet
Overlap geneIrf2
Upstream geneSorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3
Downstream geneEnpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464G20.T7 (MSMg01no464_g20.b1)MSMg01-464G20.TJ (MSMg01no464_g20.g1)
ACCAG548845AG548846
length765798
length of high quality
(start - end)		239 (71 - 309)378 (73 - 450)
definitionCHROMAT_FILE: MSMg01no464_g20.b1 PHD_FILE: MSMg01no464_g20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:12 2005CHROMAT_FILE: MSMg01no464_g20.g1 PHD_FILE: MSMg01no464_g20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,807,271 - 47,807,509)(47,954,136 - 47,954,513)
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXCTAATGCAAGAACACCGCGGAATT
CTTTCCTTGCCATTGACTTGGATCAGTCCTCTGACTCAGGCCCCAAACTT
ACATCTACTCTTCAGGCAATTACAGCTGAAATAGCACATTGGGTACAGCT
CAGGTACCCAAGCCAGCACCCTATGGCCCTCTCCACTCCTGTTGTGTTCT
TCTCCCGAGTCACCTCCAGATGCCTGGAGAGAATCTCTCAGCTCCCGAGA
GCAGCTACGCATCTCCACTGAGGATAGCAATCTCAGGAAGCCGGCTTGAT
GGGAATGAAGTGTATGTCTTGACAGTGACTGAGCTGTCAACCAGAGCAGT
ACCTACCACTTCCCTTACTCAGTATACATAGGTTGGAGCTTTCTAGATAT
TAGCTTTACTCTCTCTGGGGTGGGGACGGGGAAGGATATATCGTTCTGAC
TCGGGATAAAGCTTAATGGGTAGAATGCTTGTTTGGCAGGCATTAGCCAT
GCAAGCTGGATTAGCCCCCAGCACCGTATACCCTGGGTGTGGAGTTCAAG
GATATCCTCAGCTGCATAGAGTTTGCGGCCAGCCTAGACTACAGGAGGCC
CTGTCTCAAAAAAATATGCGATATATATGTGTTCATATGTTTGCGCTTAT
TTAACAGACGAGAAAACTGCCTCTTACACATCTAGATTCTACTCTACTGT
GCTACATTACTGGAATATATTCCTCCATCCCAATCCTTAGCTTGTGTACC
CCCAGGGGTCCTCTN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCACTTCATGGGGGACAGAAAGCATAA
TAAGGGATGAAAAGGGGGGCCAGGGACAAAATCCCCAGGACCTCCACAAG
TGTTTAACTTTCACCAGTAGACCTGACTTTATGGAGTTTCCAGAACTAAC
TGGAAACTAAACTATTAGAGCATGGGCCCACGGGAAATCTTTGAAAGTCA
AATCATAGCTTTTAAAAGTTGTAGCGCAGGAAGGCGTGTCTTCTGAAGAA
ATGACAACATTTGACAACAACTAAAAAGCTCGCAGTGCTGCTCAAAGTCA
GTGGGTCATGGAAAACAAACCAGGGTGTGAAATAGGAAGGGGATGAGGAA
GAGAAAGGATTCCAGGAGCGTGGGGGGAGGTTAGGAGAGGGCAAAGGGAA
GGGTTGTAAAAACTAATTCATCTGTATTACATCCCTTGTCAAACTTATAT
CCTAACTTTCCTGCTCCTTCTCGCCATATATTCCTTCTCTGCGATATTCC
CTCCTTCCTTTTCTATTCCCTCTACTTCTTTCTCTTTCGCATCTCCGCCG
CCGTTCTTCCCTGCTTCTCCTCTCCTCTTTTCTTCCTGACTCCTTCCATT
ACCATCTTTCTCTTCTTTCTCTTCCTTCTCCCGCTTTTATTTCCTTTCTC
CTTACTTTTCCCTCATCTTTCTCTCTAACACTATTCCTTCTCTCCTTTTT
TTTCCCCCTCTCCCTCCTTTTCCTCCCCTTTTTTTTTTCCTTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_g20.b1 MSMg01no464_g20.b1 CHROMAT_FILE:
MSMg01no464_g20.b1 PHD_FILE: MSMg01no464_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:12 2005
         (239 letters)



>mm_chr8_47807071_47807709
          Length = 639

 Score =  400 bits (207), Expect = e-116
 Identities = 231/239 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatcagtcctctgactcaggccccaaacttacatctactcttcaggcaattacagctgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatcagtcctctgactcaggccccaaacttacatctactcttcaggcaattacagctgaa 260

                                                                       
Query: 61  atagcacattgggtacagctcaggtacccaagccagcaccctatggccctctccactcct 120
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 261 atagcacattgggtacagctcaggtactgaagccagcaccctatggccctctccactcct 320

                                                                       
Query: 121 gttgtgttcttctcccgagtcacctccagatgcctggagagaatctctcagctcccgaga 180
           ||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 gttgtgttcttctcttgagtcacctccagatgcctggagagaatctctcagctcacgaga 380

                                                                      
Query: 181 gcagctacgcatctccactgaggatagcaatctcaggaagccggcttgatgggaatgaa 239
           |||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 381 gcagctacgcatcttcactgaggatagcgatctaaggaagccggcttgatgggaatgaa 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no464_g20.g1 MSMg01no464_g20.g1 CHROMAT_FILE:
MSMg01no464_g20.g1 PHD_FILE: MSMg01no464_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:12 2005
         (378 letters)



>mm_chr8_47953936_47954713
          Length = 778

 Score =  669 bits (346), Expect = 0.0
 Identities = 370/378 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcacttcatgggggacagaaagcataataagggatgaaaaggggggccagggacaaaat 60
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 578 ttcacttcgtgggggacagaaagcataataagtgatgaaaaggggggccagggacaaaat 519

                                                                       
Query: 61  ccccaggacctccacaagtgtttaactttcaccagtagacctgactttatggagtttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ccccaggacctccacaagtgtttaactttcaccagtagacctgactttatggagtttcca 459

                                                                       
Query: 121 gaactaactggaaactaaactattagagcatgggcccacgggaaatctttgaaagtcaaa 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gaactaactggagactaaactattagagcatgggcccacgggaaatctttgaaagtcaaa 399

                                                                       
Query: 181 tcatagcttttaaaagttgtagcgcaggaaggcgtgtcttctgaagaaatgacaacattt 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 398 tcatagcttttaaaagttgtagcccaggaaggcgtgtcttctgaagaaatgacaacattt 339

                                                                       
Query: 241 gacaacaactaaaaagctcgcagtgctgctcaaagtcagtgggtcatggaaaacaaacca 300
           |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 338 gacagcaactaaaaagctcgcagcgctgctcaaagtcagtgggtcatggaaaacaaacca 279

                                                                       
Query: 301 gggtgtgaaataggaaggggatgaggaagagaaaggattccaggagcgtggggggaggtt 360
           ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 278 gggcgtgaaataggaaggggatgaggaagagaaaggattccaggagcgtgggaggaggtt 219

                             
Query: 361 aggagagggcaaagggaa 378
           ||||||||||||||||||
Sbjct: 218 aggagagggcaaagggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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