BAC Information

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BAC

Clone NameMSMg01-467A14
Chromosome8 (Build37)
Map Location 124,447,332 - 124,447,719
singlet/doubletsinglet
Overlap geneCar5a
Upstream geneLOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1, 1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644
Downstream geneBanp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467A14.T7 (MSMg01no467_a14.b1)MSMg01-467A14.TJ (MSMg01no467_a14.g1)
ACCAG550843AG550844
length747769
length of high quality
(start - end)
388 (64 - 451)356 (70 - 425)
definitionCHROMAT_FILE: MSMg01no467_a14.b1 PHD_FILE: MSMg01no467_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:46 2005CHROMAT_FILE: MSMg01no467_a14.g1 PHD_FILE: MSMg01no467_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGCGCTATACGACTCCTATATCCAGAAATCCGCGGAATTCACGA
AATTCCCAATACAAGAAAGCCTCCGTGGGGGAGAACGGGCTGGCGGTCAT
CGGCGTGTTTCTGAAGGTAGCGTCTGCTGGGCGGCCACGCCTCTCGCACT
GAGAATGGCGGGTCCGGTCATCAACAATGGCCTTTCGCACACTGCCCCTC
TTGCGAGCACAGTGTGTTTCCATTGTCTGCTGCCCAGGCTAACACTCTGT
GTCTGTGCTACACAGCTCGGGGCCCATCACCAGGCCCTGCAGAAGCTGGT
GGATGTCTTGCCGGAAGTAAGACACAAGGTAAGAATCGTGAAATCAGCAC
AGTTGGGCACCCCAGTTGCCAGAGCAACGACTCACTCAGGAAAATTCAAA
GAGTTTGGCAGAGGCTGTGGGGTTCTGGTTCTGGTAAGAGAAGGTAAGGG
CCAGTCGGTCCTAAGCAAGACCCTTGCCACGAGCCTGGATTTGGACATAT
AGTATACAGATTGGTGTTCTATGTTTGTAATTCCCGCCCTTGACACTTCC
TAACCAGCATATTATTCTTATCTTCAATGTTATACTGTGTTTTCATACTG
TGTTCCAGTCTTATCTTGTGCCCTATTTATTGATCTCTTTTATCTCGCTC
CTTTCTCTCCTACCCTTTCCTGCCATACTCTTGTGTTTACTAATATCTTT
CCTCTATCATTTCCTCCACCCTCTCTCTCTTTCTATCTTATATATTN
TATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATAGACAAACTATGCCCTTTGTGGTGAATAT
TTGAATATGCTTGGCCCAGGGAGTGGCACCATTTGGAGGTGTGACCCTGT
TGGAGTAGGTATGGCCTTGTTAGAGTAGGTGTAGCCATGCTGGAGTGGGT
GTGGCCTTGTTGGAGTGGGTGTGGCCTTGTTGGAGTGGGTGTGGCCTTGT
TGGAGTGGGTGCGGCTTTGTAGGAGTATGTATATCACTGTGGGCATGGGC
TTTAAGACCCTCATCCTAGCTGCCTGGAAACCAGTCTTCTCCTAGCTGCC
TTCCGATGAAGATGTAGAACTCTCAGCTACTCCTGCACCATGCCTGCCTG
GATGCTGGCTGCCATGCTGCCAGCCTTGGTGATCACAGACTGAACCTCTG
AACCTATAAGCCAGCCCCAATGTTACCCTGATAAGAGTTGCCTTGTTCAT
GGTGTCTGTTCTCAGCACACCTATCTTATCTTATTACCCCCTTCCAAGCT
GTTCATAACAGTTTGGCCCCTTGGTTTCGTTCTGGACATTACTTCTCTTT
CTCTTTTTCCCCCCTCTTCCCCGGTCTTCTTTGTATCACATGTATTTTTT
CATTTGTTTTCCCCTCTGGCTTTTTTTATTTTCATTCTCCCTTCCCTCTT
CTTCTTATCTTTTTCTTCCCTTTTCCATNCCATTTTGCGCCTTTTTCTCA
CTCTCCTTCTCCTCCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_a14.b1 MSMg01no467_a14.b1 CHROMAT_FILE:
MSMg01no467_a14.b1 PHD_FILE: MSMg01no467_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:46 2005
         (388 letters)



>mm_chr8_124447132_124447919
          Length = 788

 Score =  719 bits (372), Expect = 0.0
 Identities = 384/388 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaagcctccgtgggggagaacgggctggcggtcatcggcgtgtttctgaaggtagcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 agaaagcctccgtgggggagaacgggctggcggtcatcggcgtgtttctgaaggtagcgt 529

                                                                       
Query: 61  ctgctgggcggccacgcctctcgcactgagaatggcgggtccggtcatcaacaatggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ctgctgggcggccacgcctctcgcactgagaatggcgggtccggtcatcaacaatggcct 469

                                                                       
Query: 121 ttcgcacactgcccctcttgcgagcacagtgtgtttccattgtctgctgcccaggctaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttcgcacactgcccctcttgcgagcacagtgtgtttccattgtctgctgcccaggctaac 409

                                                                       
Query: 181 actctgtgtctgtgctacacagctcggggcccatcaccaggccctgcagaagctggtgga 240
           |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 408 actctgtgtctgtggtacacagctcggggcgcatcaccaggccctgcagaagctggtgga 349

                                                                       
Query: 241 tgtcttgccggaagtaagacacaaggtaagaatcgtgaaatcagcacagttgggcacccc 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 348 tgtcttgccggaagtaagacacaaggtaagaatcgtgaaaccagcacagttgggcacccc 289

                                                                       
Query: 301 agttgccagagcaacgactcactcaggaaaattcaaagagtttggcagaggctgtggggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agttgccagagcaacgactcactcaggaaaattcaaagagtttggcagaggctgtggggt 229

                                       
Query: 361 tctggttctggtaagagaaggtaagggc 388
           ||||||||||| ||||||||||||||||
Sbjct: 228 tctggttctgggaagagaaggtaagggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)