BAC Information

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BAC

Clone NameMSMg01-467I05
Chromosome8 (Build37)
Map Location 62,076,451 - 62,076,970
singlet/doubletsinglet
Overlap genenone
Upstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
Downstream geneAadat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467I05.T7 (MSMg01no467_i05.b1)MSMg01-467I05.TJ (MSMg01no467_i05.g1)
ACCAG551204AG551205
length735770
length of high quality
(start - end)		520 (69 - 588)159 (75 - 233)
definitionCHROMAT_FILE: MSMg01no467_i05.b1 PHD_FILE: MSMg01no467_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:25 2005CHROMAT_FILE: MSMg01no467_i05.g1 PHD_FILE: MSMg01no467_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCTTATTTTTATACTATATCCATAACAAGGTCCTACATTAAAAGAAGG
TACCCTCACATCACAAAGCAATCAAACATTCATAATCTCAAATTTAATTT
AATGGACAAACAGAAGAATGATTTATTTACACTTGTATTAATCATGCATT
ACATAATAATTAAATATTAACTAGATTTTTATAAACCACAAGAACTTTCT
ATTATTAATATGTTCTATATGCCAACAAACAAAGCTAACCGAAGCACTTT
TTCATCTTGAGACATAGTTGTGTACCAAGATATAACTAAGTGACCTTCCC
ATTGATATACTACTTTTGTTTTAGGAGCAGAACATGTGCCATGGTAATCA
TTGTTAAACATTTTCCTACAGGTTCAGGGTGCTTACAAATTAAATAAGAA
AATTTATTGTTACTAAAAATTTGCCATTATGTGTGTTAAATATATATATT
TCTATACATATATAAATTAACAAAGTGCATGCACTCACACCAATATGTAC
TTATACATACATGTATACACATTTATACATATGTATTATTCATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGTCCTTCAACAGAAGAATGTACTA
CACAGCTATTATAAATCAATGAATTCCTGAATTTCTTATACAAATGTCTG
GAAATATAAAAATCTTCCTGACGGGAGTAACCCAA

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGACAGAAGGGGAACAGAGATGAACT
GGGAGAGGTACAGAGAGGGAAAATCAAATCAGGATATATTTCGTGATAAG
AAAACTATTTTCAATAATTGAAAAATCTGCATGAACTTCAATTAAATACA
AGTATTCTGCATTGTTAATTGACCATAAGAGGATNNTTAGAGNNATATNN
AATCCTTCTAAGAAATCCTTTATAACAAAATAAATAAAANGNNNNNNNNN
NNNAAANAAAAATTTTAAATATTTATTAATTAATTTTTTTTTATATAAAT
TTTTNTTTTTTNTTATATATTATTATTNTNNATTTTTATATATTTTTANA
ATTAATTATATTATTATTNATTTACAAAATACCANTTTNNTATATTTTTT
TTTTTCAANTTCTATATTTTCTTATTTTCCTTTTCTCTTCATTTCCTATA
TCTTTTTCCTACCTTTCTCTCTTTTTTTCTTTCCTTCTCCCTCTCTCTTT
TTCCCCCCTTATCCTTTACATTCATTTTCTTTCATCCTCCTCCCCCTCCA
TTTCCCTTCCTACCTTCTATCATATATCCCTTCCCATTTTTTTATTTTAT
TCCTCTCCTCTTTTCCACTTATTTCTTCTTCCCCCTCTTTTACCTCCCCC
TATTTTCACCTCTCCTTTCACTCCCCTCCCTTTTTCCCTTTTCACTTTCT
CCATACCTCTTTTCCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_i05.b1 MSMg01no467_i05.b1 CHROMAT_FILE:
MSMg01no467_i05.b1 PHD_FILE: MSMg01no467_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:25 2005
         (520 letters)



>mm_chr8_62076354_62077273
          Length = 920

 Score =  975 bits (504), Expect = 0.0
 Identities = 516/520 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatccataacaaggtcctacattaaaagaaggtaccctcacatcacaaagcaatcaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tatccataacaaggtcctacattaaaagaaggtaccctcacatcacaaagcaatcaaaca 558

                                                                       
Query: 61  ttcataatctcaaatttaatttaatggacaaacagaagaatgatttatttacacttgtat 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttcacaatctcaaatttaatttaatggacaaacagaagaatgatttatttacacttgtat 498

                                                                       
Query: 121 taatcatgcattacataataattaaatattaactagatttttataaaccacaagaacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 taatcatgcattacataataattaaatattaactagatttttataaaccacaagaacttt 438

                                                                       
Query: 181 ctattattaatatgttctatatgccaacaaacaaagctaaccgaagcactttttcatctt 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 437 ctattattaatatgttctatatgccaacaaacaaagctaaccaaagcactttttcatctt 378

                                                                       
Query: 241 gagacatagttgtgtaccaagatataactaagtgaccttcccattgatatactacttttg 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gagacatagttgtggaccaagatataactaagtgaccttcccattgatatactacttttg 318

                                                                       
Query: 301 ttttaggagcagaacatgtgccatggtaatcattgttaaacattttcctacaggttcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttttaggagcagaacatgtgccatggtaatcattgttaaacattttcctacaggttcagg 258

                                                                       
Query: 361 gtgcttacaaattaaataagaaaatttattgttactaaaaatttgccattatgtgtgtta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gtgcttacaaattaaataagaaaatttattgttactaaaaatttgccattatgtgtgtta 198

                                                                       
Query: 421 aatatatatatttctatacatatataaattaacaaagtgcatgcactcacaccaatatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aatatatatatttctatacatatataaattaacaaagtgcatgcactcacaccaatatgt 138

                                                   
Query: 481 acttatacatacatgtatacacatttatacatatgtatta 520
           ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 137 acttatacatacatgtacacacatttatacatatgtatta 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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