Query= MSMg01no467_l05.b1 MSMg01no467_l05.b1 CHROMAT_FILE:
MSMg01no467_l05.b1 PHD_FILE: MSMg01no467_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:39 2005
(300 letters)
>mm_chr8_118738745_118739444
Length = 700
Score = 520 bits (269), Expect = e-152
Identities = 292/305 (95%), Gaps = 10/305 (3%)
Strand = Plus / Plus
Query: 1 cttgaattctgctcagcactgggattcaaagaccagaaaaatctaactttcaagaagtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgaattctgctcagcactgggattcaaagaccagaaaaatctaactttcaagaagtca 260
Query: 61 ttggtacagtggaagagatatacaaatgtccccttgtgactgaagtttcaagatgatctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggtacagtggaagagatatacaaatgtccccttgtgactgaagtttcaagatgatctg 320
Query: 121 ctgccgaccttgaagatgacggaaagcgaaggacccagggaatgcaggtgtcttctagaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ctgccgaccttgaagatgacggaaagcgaaggacccagggaatgcaggtggcttctagaa 380
Query: 181 gctggaagaggcatgaatattgattttctagagagtctttacaaaaagctaatctgt--- 237
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 gttggaagaggcatgaatattgattttctagagagtctttacaaaaagctaaactgtggc 440
Query: 238 --ttttttgccttgaattttgggacatcttatctactatttgggacatcttatctaacta 295
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aat-----gccttgaattttgggacatcttatctactatttgggacatcttatctaacta 495
Query: 296 ttaga 300
|||||
Sbjct: 496 ttaga 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space: 201081
Effective search space used: 201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_l05.g1 MSMg01no467_l05.g1 CHROMAT_FILE:
MSMg01no467_l05.g1 PHD_FILE: MSMg01no467_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:39 2005
(478 letters)
>mm_chr8_118916500_118917376
Length = 877
Score = 843 bits (436), Expect = 0.0
Identities = 463/472 (98%), Gaps = 1/472 (0%)
Strand = Plus / Minus
Query: 1 agatactcagaacctcagaaccgtgcaaaagacagacacatcagcataagcacccagaat 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 671 agatactcagaacctcagaaccgtgcaaaagacagacacatcagcacaagcacccagaat 612
Query: 61 tgacatgcatcaacaggaagtgggaggtggcgacaggacccctgttgggattgccataat 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 611 tgacatgcatcaacaggaagtgggaggtggcgacaggatccctgttgggattgccataat 552
Query: 121 aactgtattaaattcgtcaaataatttctcaggacttggattgctagtgatattaattta 180
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aactgtattaagttcatcaaataatttctcaggacttggattgctagtgatattaattta 492
Query: 181 gctgtttacaagtgcaggatatttttccatttataaacttttagatcctttgatgattct 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 491 gctgtttacaagtgcaggatatttttacatttataaacttttagatcctttgatgattct 432
Query: 241 tactattatccctcccacagccttaacatttaaatagtctcattcctttctagtgacaaa 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tacta-gatccctcccacagccttaacatttaaatagtctcattcctttctagtgacaaa 373
Query: 301 atgctgtcaccctttcctttcccattgtctagtcggacagcactgatgtgtagaattatt 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atgctgtcaccctttccttttccattgtctagtcggacagcactgatgtgtagaattatt 313
Query: 361 ttcattttaaacccatattcagacactatgccaagataaccttttaaaacacagaatttt 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 312 ttcattttaaacccatattcagacaccatgccaagataaccttttaaaacacagaatttt 253
Query: 421 tatttcttgcattaatttagggatttttatatagaaacaaattcatttctaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tatttcttgcattaatttagggatttttatatagaaacaaattcatttctaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 877
Length adjustment: 10
Effective length of query: 468
Effective length of database: 867
Effective search space: 405756
Effective search space used: 405756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
