BAC Information

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BAC

Clone NameMSMg01-467N08
Chromosome8 (Build37)
Map Location 130,942,226 - 130,942,622
singlet/doubletsinglet
Overlap geneNrp1
Upstream genePard3, EG628847
Downstream geneLOC668494, Itgb1, LOC100042659, LOC100042667, Ccdc7, 1700008F21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467N08.T7 (MSMg01no467_n08.b1)MSMg01-467N08.TJ (MSMg01no467_n08.g1)
ACCAG551447AG551448
length756773
length of high quality
(start - end)
417 (45 - 461)164 (122 - 285)
definitionCHROMAT_FILE: MSMg01no467_n08.b1 PHD_FILE: MSMg01no467_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:49 2005CHROMAT_FILE: MSMg01no467_n08.g1 PHD_FILE: MSMg01no467_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATAAGATTTCCTCTCGGTTTGAAAAGAATGTCCCACATTATGCACA
GGACACCCCTACCACAGACAAAGCAACACTACTTAATAATAGAGAATTGT
GCTTCAGAGATTTTGCTTTTTCTTGTTAATTGGTTACTTTAACTGACATT
GTCTGCAAGTATAATGGACACCATTATTCTCAATGGTTCTGTGTTGTTGA
TAATGTGCACAGGCAGTGCAGTCCATTTTAATTATTGCATTTCACTGTTT
CGTCCCCGTGAACTGATTTGTGGTAAATGCAGATGGTGCATTCCCCCACC
CCGCCCCCCGACAGATCATACCAGCTGTTACATTTCTCAAAATGTGAAAT
TGAAAGGGCCTTCCTCTCTGCCTCACATCACCTCCTTTTCTCTTTTGCAA
GGTATGACTACGTGGAAGTAACCGATGGGTAGAATGAAGGCGGCCGCCTG
TGGGGGAAGCTCTGTGTTAAGATTGCACCTTCTCCTGTGGCGTCTTCAGG
GCCCTTTTCTCTTCATTATATTTGTCTCCTGACTATTACACCCCTTTTCC
CATTCCCCTTCCCTCCTCTTACCATATCCTTCTCTAAAAGTTCACTTACC
TCTCTTTTTTAACTCGTATTCGATTATATCGCCTTCCTTTTCTCTTTGTT
TTTACATTTTCCATTTTCCCCCTGGCTTTACCTTTCATAACCACGCCCTC
CCCTTN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTGTGTAGGAAGGATGACTTTGAACTT
CTGATCCTTCTAAGTGTTGCGGTTAGATTTGTGCTATTATGGTGGTTTTA
TGAAGTGTTTGGGATAGAACCCAGGGCTTTGTTCATGCTAAGCAAACACT
ACCAACTGAGATACATCTCTAGGAGTCTTGTTTATTTTATTTTAGAGTTC
ATAATTTTTAAAGATTTGTTTTATTTTTAATTAACATTTTTATTCTTTGA
GAATTTCATGCTTTGCATAGTGATCTCCCAACTCTCCCCAGACCCCCATC
CCCTATCTTACTTCCTGCCACTTAACTTAGGGTCTTCTTTTATTCCTATT
TTTTAAAACCCTTCACGCCCAATTTGTGACCCTCCTGCGGAGTATACTGC
AACTTCTAGGCGCTCACCCCTCTTATATAACCCCTACCCCCCTTCTCCCT
TACCCTATAGCTCCCCATTATTACTCCGCCATGCCCTCCACTTTTTTGCC
CCTCTTCCCCTCATCTTTCTTCCCCCTCTTTCTCTTTTTTTCCTCCCCCA
TCCCCTTTTACTCTTCTCCCCACCCCCCCCTTCCTCTACCCCCTCTCCTC
TTACTTCTCTCTCCTCTTCTCCTTATTAACCCCCCCGATTTCTCCCCCCC
CCCCCTCCTTATACTCTTTTACCACCTTCCCTTTCCTTTACCTCCCTATA
CCTCCTATTCATTACTCTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_n08.b1 MSMg01no467_n08.b1 CHROMAT_FILE:
MSMg01no467_n08.b1 PHD_FILE: MSMg01no467_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:49 2005
         (417 letters)



>mm_chr8_130942006_130942822
          Length = 817

 Score =  737 bits (381), Expect = 0.0
 Identities = 393/397 (98%)
 Strand = Plus / Plus

                                                                       
Query: 21  ctctcggtttgaaaagaatgtcccacattatgcacaggacacccctaccacagacaaagc 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ctctcggtttgaaaagaatgtcccacattatgcacaggacacccctaccacagacaaagc 280

                                                                       
Query: 81  aacactacttaataatagagaattgtgcttcagagattttgctttttcttgttaattggt 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aacactacttaataatagagaattgtgcttcagagattttgctttttcttgttaattggt 340

                                                                       
Query: 141 tactttaactgacattgtctgcaagtataatggacaccattattctcaatggttctgtgt 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tactttaactgacattgtctgcaagtataatggacaccattattctcaatggttctgtgt 400

                                                                       
Query: 201 tgttgataatgtgcacaggcagtgcagtccattttaattattgcatttcactgtttcgtc 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgttgataatgtgcacaggcagtgcagtccattttaattattgcatttcactgtttcgtc 460

                                                                       
Query: 261 cccgtgaactgatttgtggtaaatgcagatggtgcattcccccaccccgccccccgacag 320
           ||||||||||||   ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 461 cccgtgaactgagcagtggtaaatgcagatggtgcattcccccaccccgccccctgacag 520

                                                                       
Query: 321 atcataccagctgttacatttctcaaaatgtgaaattgaaagggccttcctctctgcctc 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atcataccagctgttacatttctcaaaatgtgaaattgaaagggccttcctctctgcctc 580

                                                
Query: 381 acatcacctccttttctcttttgcaaggtatgactac 417
           |||||||||||||||||||||||||||||||||||||
Sbjct: 581 acatcacctccttttctcttttgcaaggtatgactac 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)