BAC Information

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BAC

Clone NameMSMg01-468H20
Chromosome7 (Build37)8 (Build37)
Map Location 111,031,344 - 111,031,509113,850,313 - 113,850,793
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOlfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66
Downstream geneOlfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468H20.T7 (MSMg01no468_h20.b1)MSMg01-468H20.TJ (MSMg01no468_h20.g1)
ACCAG551949AG551950
length779777
length of high quality
(start - end)		166 (332 - 497)492 (78 - 569)
definitionCHROMAT_FILE: MSMg01no468_h20.b1 PHD_FILE: MSMg01no468_h20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:43 2005CHROMAT_FILE: MSMg01no468_h20.g1 PHD_FILE: MSMg01no468_h20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:43 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,031,344 - 111,031,509)(113,850,313 - 113,850,793)
sequence
TATACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGCAAGACC
GCGGAANTCTTTTTTTTTTCTTACATGGGTTATAGCTCTGAGGCATTTTT
ATTACAAAAACATGCTCATAAGTAGACTAATGGACTTAAAATTCATCAGA
TTACTTTATTTTTTAGCTTGTCCTTCTAGTAAGTCTTTAGCTTCATTGAT
TTTGGCTGCTATATAAGGAGATCCTCCCTTGTCTGGGTGATTTAATAGCA
TAATCCGGTGATGAGCATCCCTGATCTTCCCTTTATTGGCAGTAGGGCTT
ACACCTAATATTAAGGCTGCTTCCTTTTTTGTCATTTTGGGTTCAAATCC
ACCTCTGTAGTACCCACCACCGAATGCAGATTTTGGTAGGCTCTGAAAAA
CTTGTTTTACTTGAGGCTCCACATGCTTCATGGCTTGTAAAACATAACGG
CCTGCAAATCCTGCAGCAGCAATGGTCAACCCGACTGCTACCACTGTGCT
GGCCATGACTCCACTCCGCGGTTCGGAACCGCGCGTTCATCCCAGCGCGA
GCCCACCGCCCCGGAACACCTGTGGAGAACGACAGGGCCGAGCCAGTGCT
GCCGCCACTTCCACAAGCCTAAAATTTTTTCAACACAAGTAAGTCAAGGC
ATGTGTGAAATTTGATCATTGTCCTCCCCGGAAAAAAAATAAATTGGATT
TCTACCGTTTTTTGGGCCAAAAAAAATCTTTTTTCTTTTTATGGTATCAC
TGCTCATATTTTTTAACCTTACACCTCCN

NCCAGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACCCTTGGACTTTACACAGGGAG
GCAAACACTGCCACTAAGCTATACCCCCAACACAGGTACAAGAATTTCTT
TGGGCTGTAATTCCACCATTGGAAATATTGAATCACAGGTTCCACATATA
TTAAATTGGCTAAGTACTACCAGGAAGCTCTTAGAGTGGAGCAGGTGTAG
CCACAGTATATAGTATTTAGAGCCTGACACCCCTGCAGTGCCTAAGAACT
ATACCCCCTGCAGTGCCTGAGAACACTTATATTTCATATACTCACTGATC
CTTGGTGTTTCTAAATTTGTTTTATCCTTATAAAGTGCTATCAGATCTGA
AGGCATTTCATTTACTAATAAATTTGATCATTTTCCTTCTTTTTTTTTTT
TCTTTTTTGTTTTTCAAAACAGGTTTTCTTTGTGTAGCTTTGGATGTCCT
AGAACTTGCTCCTCTGGAGACCAGGCTGGGTCTCGAACTCACAAGAGATC
CACTTGCCTCTACCTCCCAAGTGCTGGGATTAAAGATAAGAGCCGTCCCC
TTCCAGTTTGAACATTTAATCTTATGTGCTTGGGTTTTAACATTTTTATT
TGCTTATCAAAAACTTGGGTTTTCATTGGGACCCGTTTAAAAAATTACCC
CCTCCCTGTTGCTATTAGAATCTCGGTATAAATTTAAATTCTTTCAATCA
TTCTCCTACATATCCCTATTACCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_h20.b1 MSMg01no468_h20.b1 CHROMAT_FILE:
MSMg01no468_h20.b1 PHD_FILE: MSMg01no468_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:43 2005
         (166 letters)



>mm_chr7_111031144_111031709
          Length = 566

 Score =  313 bits (162), Expect = 3e-90
 Identities = 165/166 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattttgggttcaaatccacctctgtagtacccaccaccgaatgcagattttggtaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattttgggttcaaatccacctctgtagtacccaccaccgaatgcagattttggtaggc 260

                                                                       
Query: 61  tctgaaaaacttgttttacttgaggctccacatgcttcatggcttgtaaaacataacggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgaaaaacttgttttacttgaggctccacatgcttcatggcttgtaaaacataacggc 320

                                                         
Query: 121 ctgcaaatcctgcagcagcaatggtcaacccgactgctaccactgt 166
           |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ctgcaaatcctgcagcagcaatggtcaatccgactgctaccactgt 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no468_h20.g1 MSMg01no468_h20.g1 CHROMAT_FILE:
MSMg01no468_h20.g1 PHD_FILE: MSMg01no468_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:43 2005
         (492 letters)



>mm_chr8_113850026_113850917
          Length = 892

 Score =  870 bits (450), Expect = 0.0
 Identities = 477/492 (96%), Gaps = 11/492 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccttggactttacacagggaggcaaacactgccactaagctatacccccaacacaggt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 768 acccttggactttacacagggaggcaaacactgccactaagctatatccccaacacaggt 709

                                                                       
Query: 61  acaagaatttctttgggctgtaattccaccattggaaatattgaatcacaggttccacat 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 708 acaagaatttctttgggctgtaattccaccattggaaatgttgaatcacaggttccacat 649

                                                                       
Query: 121 atattaaattggctaagtactaccaggaagctcttagagtggagcaggtgtagccacagt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 648 atattaaattggctaagtactaccaggaagctcttagagtggagcaggtgtaaccacagt 589

                                                                       
Query: 181 atatagtatttagagcctgacacccctgcagtgcctaagaactataccccctgcagtgcc 240
           |||||||||          || |||||||| |||||||||||||||||||||||||||||
Sbjct: 588 atatagtat----------ac-cccctgcaatgcctaagaactataccccctgcagtgcc 540

                                                                       
Query: 241 tgagaacacttatatttcatatactcactgatccttggtgtttctaaatttgttttatcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgagaacacttatatttcatatactcactgatccttggtgtttctaaatttgttttatcc 480

                                                                       
Query: 301 ttataaagtgctatcagatctgaaggcatttcatttactaataaatttgatcattttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttataaagtgctatcagatctgaaggcatttcatttactaataaatttgatcattttcct 420

                                                                       
Query: 361 tcttttttttttttcttttttgtttttcaaaacaggttttctttgtgtagctttggatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tcttttttttttttcttttttgtttttcaaaacaggttttctttgtgtagctttggatgt 360

                                                                       
Query: 421 cctagaacttgctcctctggagaccaggctgggtctcgaactcacaagagatccacttgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cctagaacttgctcctctggagaccaggctgggtctcgaactcacaagagatccacttgc 300

                       
Query: 481 ctctacctccca 492
           ||||||||||||
Sbjct: 299 ctctacctccca 288


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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