Query= MSMg01no473_k06.b1 MSMg01no473_k06.b1 CHROMAT_FILE:
MSMg01no473_k06.b1 PHD_FILE: MSMg01no473_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:48 2005
(528 letters)
>mm_chr8_89560092_89561019
Length = 928
Score = 973 bits (503), Expect = 0.0
Identities = 520/527 (98%), Gaps = 4/527 (0%)
Strand = Plus / Minus
Query: 4 aattccagggaatt--ttccctgaatgtgcatcactgttctaacatcataaatctggaaa 61
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aattccagggaatttctt--ctgaatgtgcatcactgttctaacatcataaatctggaaa 800
Query: 62 agttttaagaggctcatctataatccaatcatcccacttctcagatgggaaaactgaggc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 agttttaagaggctcatctataatccaatcatcccacttctcagatgggaaaactgaggc 740
Query: 122 ttggaaagttgtggttatgagaccggaacagaacggcaggtggccatcatcattttgtat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttggaaagttgtggttatgagaccggaacagaacggcaggtggccatcatcattttgtat 680
Query: 182 gcatgaccattaaatgctgtcgcctggtgggagccagagccaaaggtccaaaaacctcta 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gcatgaccattaaatgctgtcgcctggtgggagccagagccaaaggtccaaaaacctcta 620
Query: 242 tgtagcactttggagaattgtcctaagaggagaccggaactctggagcctccttctcttt 301
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 619 tgtagcactttggagaattgtcctaagaggagaccggaacactggagcctccttctcttt 560
Query: 302 ccttcacatccatggcctcctggagagtgacgtgaattgagagatgttctattttttatt 361
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ccttcagatccatggcctcctggagagtgacgtgaattgagagatgttctattttttatt 500
Query: 362 ttatcttcttctggaattgcttacttcagttacagattcaatatgaattcacctcctagc 421
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttatcttcttctggaattgtttacttcagttacagattcaatatgaattcacctcctagc 440
Query: 422 ttaaggacatagacattttcaagtattctggtttgggcttcccccctccttttctttttc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttaaggacatagacattttcaagtattctggtttgggcttcccccctccttttctttttc 380
Query: 482 ctctgaaacaggttttcttgttttttagagcagtttttgattagcaa 528
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctctgaaacaggttttcttgttttttagagcagtttttgattagcaa 333
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_k06.g1 MSMg01no473_k06.g1 CHROMAT_FILE:
MSMg01no473_k06.g1 PHD_FILE: MSMg01no473_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:48 2005
(523 letters)
>mm_chr8_89364686_89365608
Length = 923
Score = 944 bits (488), Expect = 0.0
Identities = 517/530 (97%), Gaps = 7/530 (1%)
Strand = Plus / Plus
Query: 1 ctcccacccccacctccaaagggggacagatcgagccaggcaattggacccacccctaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 194 ctcccacccccacctccaaagggggacagatcgagccaggcaattggacccacccccaaa 253
Query: 61 tcgaacagaggtgggtcctgtctctgaacacgatcaccatagatcctcaagggacctctt 120
| ||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 254 ttgaacaaaggtgggtcccgtctctgaacacgatcaccatagatcctccagggacctctt 313
Query: 121 gccaaag--g-----aagaaagcaccaccctccagctctcacttgaacagacatttattg 173
||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gccaaagccgcagtcaagaaagcaccaccctccagctctcacttgaacagacatttattg 373
Query: 174 agcacctaccaagtgcaaggcacttttaggtgccacaagagatacagagtgaccatatgg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agcacctaccaagtgcaaggcacttttaggtgccacaagagatacagagtgaccatatgg 433
Query: 234 tccctgcccacgaggagctcacagtctagagggaggcaacacagtacacagttggctgca 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tccctgcccacgaggagctcacagtctagagggaggcaacacagtacacagttggctgca 493
Query: 294 gctacaccggccagagtggtaagagccagaagcgagacaccaaattgccatggggccaca 353
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 494 gctacaccggccagagtggtaagagccagaagcaagacaccaaattgccatggggccaca 553
Query: 354 gaatagcatagagctgcttctgctctgaacacaaagagaactcagggctgggcctttgag 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gaatagcatagagctgcttctgctctgaacacaaagagaactcagggctgggcctttgag 613
Query: 414 gaggcaggctgtagggaagaagggcatgtctatgagaggaagaaacatgaacagggccta 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gaggcaggctgtagggaagaagggcatgtctatgagaggaagaaacatgaacagggccta 673
Query: 474 tggggaacctagatctgggtggctggagtaaggatcatggcaagagaaag 523
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tggggaacctagatctgggtggctggagtaaggatcatggcaagagaaag 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
