BAC Information

Click to search

BAC

Clone NameMSMg01-474G12
Chromosome8 (Build37)
Map Location 115,294,211 - 115,294,398
singlet/doubletsinglet
Overlap geneCntnap4
Upstream geneCfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
Downstream geneLOC100042061, Mon1b, 4930481F22Rik, Adamts18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474G12.T7 (MSMg01no474_g12.b1)MSMg01-474G12.TJ (MSMg01no474_g12.g1)
ACCAG556476AG556477
length739756
length of high quality
(start - end)
501 (78 - 578)188 (125 - 312)
definitionCHROMAT_FILE: MSMg01no474_g12.b1 PHD_FILE: MSMg01no474_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:51 2005CHROMAT_FILE: MSMg01no474_g12.g1 PHD_FILE: MSMg01no474_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:51 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNCCTTATAATTTGCNGGCGCTATACGAATCACTATTCATACACGATCCG
CGGAATTCATGAATTTCTTAAACAAATGGATGGAATTAGAAAATATTATC
CTGAGTGAGGTAACTCAGTAACACAAGAAGACACATGGTATGCACTCATT
GATAAGTGGATATTAGCCTAAAAGCTCAGAATACCCAAGATAAAATTCAC
AGACCACATGAACCTGCGGAGAAGGAAGACCAGTGTGGGTGCTCCAGTCC
TTCTTAGAAGGGGCAACATAATACTCATGGGAGGAAATATGGAGACAAAG
TATGCAACAGAGACTGTAGTAATGGCCATCCAGAGACTGCCCCTAGGGCT
CCATCCCATATACAGTCCCATCTACAGACACTAAACCTAGACACTATTGC
AGATGCCAAGAAGTGCTTGTTCACAGGAGCCTGATATAGCTGTCTCCTAA
GAGGCTCTTTCAAAGGTGGATGCTTACAGCCAACCATTGGAATGAGCATG
GTGTCTCCAATGGAGGACTTAGAGAAAGGACTGAAGGAGCTGAAGGGGTT
TACAACCCCATAGGAAGAACAACAATATCTACCAAACAGACCCTTCACAC
CACCACCACCACCACCACCAACACCACCACCACCACCATCACCTATTTAT
TTCCCTTGGACTTAAACCACCAACCAAAGAGTACCCCTGGAAGGGACCCA
TGGCTTCCAGCGGCTAATATATCAAAGGATGGGGCTTGT
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTAACGCAAAACATCTCCCATCTTTTCATGCATATCATAAAT
AAATATTTGTCTCTCTAAGACCGTCTAGGTAGTGACCACTACCTAAGTTT
AGAGTATATTTTTATTTGCCTGCTTTTATAAATGTATAAACATATGTGCT
ATGCCTAAAAGATATGCTACAGAGCTTCCTTGGTAAAACCCCAACACTTT
TTGCTTCAATATATTCCCTGCAGGGTCTTGGCTACCCCAACATTTTAGGA
TTTAGCTTCATGCNNCTAGATTTCTGATTGAGAAGTTCAGGCCATATAAC
AGTCTTATTAGGATTTACAGACTGAGAATTCTGTGTCCCCAAAACATTCA
AGGCAGAGGATTCCAAGTGGGCATCACATCTTTCCTGGCATCCTTTGGGG
ATTATTGGCAAAGGTGTGTTTGTCTAAGGCATCAGCTACTCACTCTTCTT
CCTTTCCTTTCTTCTCCCCCCCCCTTCTCATCCTTCTTCCCTCTTTTCTT
CCTCTCTTCTCCTTTCCTCTTCTTTTCCTTATTTTTCCCTTTCCCCCCTC
TTCCTCCCCTCTTACTTTATTTCTTCTTTTTACATTAACTTTCTCTTCCC
CCTTTTTTTTTTTTTTCTTCTTCACCACAACCGCACTCTCACTTTCTCCT
TACCCTCCTTCATCCTTCATTTACATACCATTCTTCCGCTTTCTTCTCTT
TTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_g12.g1 MSMg01no474_g12.g1 CHROMAT_FILE:
MSMg01no474_g12.g1 PHD_FILE: MSMg01no474_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:51 2005
         (188 letters)



>mm_chr8_115294011_115294598
          Length = 588

 Score =  325 bits (168), Expect = 1e-93
 Identities = 183/188 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaggtagtgaccactacctaagtttagagtatatttttatttgcctgcttttataaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaggtagtgaccactacctaagtttagagtatatttttatttgcctgcttttataaatg 260

                                                                       
Query: 61  tataaacatatgtgctatgcctaaaagatatgctacagagcttccttggtaaaaccccaa 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataaacatatgtggtatgcctaaaagatatgctacagagcttccttggtaaaaccccaa 320

                                                                       
Query: 121 cactttttgcttcaatatattccctgcagggtcttggctaccccaacattttaggattta 180
           |||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caccaatcgcttcaatatattccctgcagggtcttggctaccccaacattttaggattta 380

                   
Query: 181 gcttcatg 188
           ||||||||
Sbjct: 381 gcttcatg 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)