Query= MSMg01no474_m02.b1 MSMg01no474_m02.b1 CHROMAT_FILE:
MSMg01no474_m02.b1 PHD_FILE: MSMg01no474_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:19 2005
(226 letters)
>mm_chr8_115095780_115096403
Length = 624
Score = 379 bits (196), Expect = e-110
Identities = 211/216 (97%), Gaps = 2/216 (0%)
Strand = Plus / Plus
Query: 8 ggaattcttagttttccgacctatttaagagttaacttttcttcaagtgtccaaatttat 67
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggaattcttagttagcagacctatttaagagttaacttttcttcaagtgtccaaatttat 267
Query: 68 aattcaatggcttccgaaaattaaggtgacttttagttaatttcttattggcattttgac 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aattcaatggcttccgaaaattaaggtgacttttagttaatttcttattggcattttgac 327
Query: 128 aatgtgacatgcaaacgtagaacaaaagatttcatttcctaatttttacattattcctca 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aatgtgacatgcaaacgtagaacaaaagatttcatttcctaatttttacattattcctca 387
Query: 188 ctctttaccattttgggaggagtcaaggttcacttg 223
|||||||| ||||||| |||||||||||||||||||
Sbjct: 388 ctctttac-attttgg-aggagtcaaggttcacttg 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 624
Length adjustment: 9
Effective length of query: 217
Effective length of database: 615
Effective search space: 133455
Effective search space used: 133455
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no474_m02.g1 MSMg01no474_m02.g1 CHROMAT_FILE:
MSMg01no474_m02.g1 PHD_FILE: MSMg01no474_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:19 2005
(415 letters)
>mm_chr8_115288905_115289719
Length = 815
Score = 688 bits (356), Expect = 0.0
Identities = 398/412 (96%)
Strand = Plus / Minus
Query: 1 cacatcttttcatgcatatcataaataaatatttgtctctctaagattctctaggtaggt 60
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 612 cacatattttcatgcatatcataaataaatatttgtctctctaagattgtctaggtaggt 553
Query: 61 cttcactacctaaatttagagtatatttttatttgcctacttttataaatgtataaacat 120
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 552 cttcactacctaaattgagagtatatttttatttgcctacttttataaatgtataaccat 493
Query: 121 atgtgggatgcctaaaagatatgctacagagcttccttagtaaaaccccaacaccaatcg 180
|||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||| |
Sbjct: 492 atgtggtatgcctaaaagatatgctacagagcttccttggtaaaaccccaacatcaaccc 433
Query: 181 cttcaatatattccctgcagggtcttggctaccccaacattttaggatttagcttcatgc 240
||||||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 432 cttcaatatatgcactgcagggtcttagctaccccgacattttaggatttagcttcatgc 373
Query: 241 tttcagagcctgattgagaagttcaggccatataacagtcttattaggatttagagactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tttcagagcctgattgagaagttcaggccatataacagtcttattaggatttagagactg 313
Query: 301 agaattctgtgtccccaaaacattcaaggcagaggattccaagtgggcatcacatctttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agaattctgtgtccccaaaacattcaaggcagaggattccaagtgggcatcacatctttc 253
Query: 361 ctggcatcctttggggattattggcaaaggtatgtttggggaagggatgagg 412
|||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctgggatcctttggggattattggcaaaggtatgtttggggaagggatgagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space: 327236
Effective search space used: 327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
