TTTGCCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGA
GAGCGCGGAATTCAGTAAGAATTTCGCCTATTCAGTGACATTCAGAATTG
TCTCTAGTATTGTAAGAGAGATAGTGAAAGAAATCAGGCATTACTATCTA
TTACATAGAGTTAGAAATCACAGGGCCAGCTTAGCAAAGTAAGTTTAGAA
TTCTTATTATAGTTATGTATGGCAGACTACATTACTTNATTAGTAGAAAG
TCCCCCCCATACAGTCACTTAGAATAATAGCTGAGCTACTCCCATATGCA
AGAATTTACAATGTCCTAGGAAGAAGGAAGGTTGTGTTCTATGAAGTAAC
TAGAGCAAATATTTTAGAACTATAGATAGCTGAGTTATCCACATACCCGG
GAATTTACCATGCCCCTAGGGGGGAACTAATCCAAGGGGACCAAAAATCC
GGAATTATGGCAAAGGGGTAAAGGTCTTTAACCCCGGGGCTTTTTAAAAT
AAATGCTGGACCTTTAAAGAGAGGGTGGTTCTTCGATCCCGGGGGGGAAA
AACGGGCGTTCCCCACTCTCCAAGGGGGCCCCTGTTATTTCTTTTTTTCT
ACCCCCTCCCCCTGGTTTTTGTGGACACACTTTCTCCTATTGCGCGGGGG
GGCTTCCCTTTTTTAAAAACATTTATTTCCCCTTTTCTCCCCCCCCTTTC
CTCCCCGTGGGTACACCTATTTGTGTTTTGCT

NNNNNNCCAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTGAAGAATTAAAGG
TTCAACAAACTAACTCCATGGTTTCTTGATTATTAAGAAAATTATAATAA
ATAGTAATATAATTAATTTACATTTTATAATAAACAATCTTATTAAATTA
ATAAGGTAGGATTTTCATTGCCCTGTTCTGTTAATACAAAGTTTTAAGCA
TACTAGATTTCTGTCTCCCACTCTTATTTTTATGTCAGCCCCCTTTTGTA
TCTATGGTTTTACATTCTGTCCATTCTCATGGAAGAGATAATAGGAGAAA
ATACATTTGAACATGCTGAACTAGTATAAAATATATTTTTATTAATAGTA
AAAATATCTTTTTATTAAATGAGGAACCATGGAGATAATTTGTTGAATTT
TTCGTTCTTTCAGTCATCCAAACAGCCAACCCAGTTGCCACGTGTCTCTC
AGGCACTGAGCTGAATGTCAGATTTAGATAGATCAAAGGCTCTACTTTCA
GAGATTCATCAACTAATGGAAAATAGATAGAAGGGCAATTTTCTAATAAC
AGCATAAGAACTCCAAAGCAAAAGTTGTACTCTTTCGCTTTTCCATATTT
GTCTCAAGTCCCATTCTTTCACAACAAAACATCACTATTCTATTTTATAG
CCTAGGCAATCAGGGCTCAAA

Query= MSMg01no475_a03.g1 MSMg01no475_a03.g1 CHROMAT_FILE:
MSMg01no475_a03.g1 PHD_FILE: MSMg01no475_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:39 2005
         (568 letters)



>mm_chr8_101212804_101213771
          Length = 968

 Score = 1098 bits (568), Expect = 0.0
 Identities = 568/568 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtttgaagaattaaaggttcaacaaactaactccatggtttcttgattattaagaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 agtttgaagaattaaaggttcaacaaactaactccatggtttcttgattattaagaaaat 555

                                                                       
Query: 61  tataataaatagtaatataattaatttacattttataataaacaatcttattaaattaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tataataaatagtaatataattaatttacattttataataaacaatcttattaaattaat 495

                                                                       
Query: 121 aaggtaggattttcattgccctgttctgttaatacaaagttttaagcatactagatttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aaggtaggattttcattgccctgttctgttaatacaaagttttaagcatactagatttct 435

                                                                       
Query: 181 gtctcccactcttatttttatgtcagcccccttttgtatctatggttttacattctgtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gtctcccactcttatttttatgtcagcccccttttgtatctatggttttacattctgtcc 375

                                                                       
Query: 241 attctcatggaagagataataggagaaaatacatttgaacatgctgaactagtataaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 attctcatggaagagataataggagaaaatacatttgaacatgctgaactagtataaaat 315

                                                                       
Query: 301 atatttttattaatagtaaaaatatctttttattaaatgaggaaccatggagataatttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atatttttattaatagtaaaaatatctttttattaaatgaggaaccatggagataatttg 255

                                                                       
Query: 361 ttgaatttttcgttctttcagtcatccaaacagccaacccagttgccacgtgtctctcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ttgaatttttcgttctttcagtcatccaaacagccaacccagttgccacgtgtctctcag 195

                                                                       
Query: 421 gcactgagctgaatgtcagatttagatagatcaaaggctctactttcagagattcatcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gcactgagctgaatgtcagatttagatagatcaaaggctctactttcagagattcatcaa 135

                                                                       
Query: 481 ctaatggaaaatagatagaagggcaattttctaataacagcataagaactccaaagcaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ctaatggaaaatagatagaagggcaattttctaataacagcataagaactccaaagcaaa 75

                                       
Query: 541 agttgtactctttcgcttttccatattt 568
           ||||||||||||||||||||||||||||
Sbjct: 74  agttgtactctttcgcttttccatattt 47


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)