BAC Information

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BAC

Clone NameMSMg01-475H08
Chromosome8 (Build37)
Map Location 41,312,503 - 41,312,721
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC632066, EG621335, LOC434304, Msr1, EG621431, LOC100039072, LOC666959, EG632166
Downstream geneFgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475H08.T7 (MSMg01no475_h08.b1)MSMg01-475H08.TJ (MSMg01no475_h08.g1)
ACCAG557280AG557281
length743787
length of high quality
(start - end)
245 (51 - 295)219 (84 - 302)
definitionCHROMAT_FILE: MSMg01no475_h08.b1 PHD_FILE: MSMg01no475_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:14 2005CHROMAT_FILE: MSMg01no475_h08.g1 PHD_FILE: MSMg01no475_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCACCATTTTCAGAGAATGCGCGGAATTCCATAATATTATCACTTTTAA
TAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTTTTTTTTATC
CATTCCTCTGTTGAGGGGCATCTGGGTTCATTCCAGATTCTGGCTATTAT
AAATAAGGCTGCTATGAACATAGTGGAGCATTGTGTCCTTCTTACCGGTT
GGGACATCTTCTGGATATATGCCCAGGATAGGTATTGCGGGATCCTCCAG
TAGTACTATGTCCAATTTTCTGAGGAATGGCCAGACTGATTTCCTGATGG
TTGTACCAGCTTGCAATTCCACCAACAATGGAGGATTGTTCCTCTTTCTC
CACATCCTTTCCAACATCTGCTGTCACCTGAATTTTTGATCTTAGCCATT
CTCACTGGTGTGAGATGGAATCTCAGGGTTGTTTTGATTTGCATTTCTCT
GATGATTAAAGATGCTGAACATTTTTTTCGGTGCTTCCCAGCCCATTCGG
ATTCCTTAGGTGAGAATTCTTTTGCTCTTCCTCCGGTTTTTTTAATGAAT
TCCAAATTTCTTCCCACCCCTCCCCACTTTTATTTCGCAGGCGTTGCCTT
TTTCCCTCTTTTGTACAACCCCTGATTTTCCTCTCCCTATTTTTCCTCTT
TTCCCTACCCCCTCCCTTTCCTTTTTCACATTTCTCTCCTCCCTTCGACA
CACTTTTACACTTTTTTTCTTTTCTCACCTCCATTTTCCTCTT
TTCTCTTCAATTTACTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCAGAAAGATGTTGAAA
TAACAGTCTTATTCACAAGATTGGGAAGGACTTAAAACTCTTTGGTTCTT
CCAGTTAATGGCCATTGTTTATTTATTTTTAATCCTCATTGAGTATGTGG
TCACAGACACAAAGAAGTAGGCAAATACTACTTCTTTTCCTCCTTCCTGC
TCCAATTTCAATGTGTTCTCTGCCTGCCAGGCTCTGGTCTTCATGTTGAG
GGCATCAGGCATAGATCTTGACCTTGTGCAACTCCATTCCCTAAGAGGAA
ACGTACAGGACCAGAACTAATCACTGCACTATCTAATAATAAGCACTGAT
CATAGATTTGTGGAAAGAGAAAAGAACAGCTTATAATTATTATCCACCCC
GGAATGGATGCATTGAACCATATACATCACCCCCATCCCTTTTTTGGCCC
CCTTATCTCCTTCCCCCTCTTATACAAATCCCTCTCTCTCGCCACTCATA
CTCCCCCCTCCTCCTTTGCTCCTCTTCCTCTCTCCCATTTTCCTTCCTTC
CCTTCTCTTCTTTTCCTTCCCCCCCCCCCTCCCTTTTTTCTTTTTTTCCT
CCCTTCCCTCCCTCCTTTACCTTCCTCCTTTTCCTCCTTTTCTTCTCTCC
TTCCTCCCCTCCCCTCTTCTCTTTTTCTCCCCCTCTCTCCCCTTTTTTTT
CTCTATTCCCCCGCCCTTTCCTCCCTCCTCCCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_h08.g1 MSMg01no475_h08.g1 CHROMAT_FILE:
MSMg01no475_h08.g1 PHD_FILE: MSMg01no475_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:14 2005
         (219 letters)



>mm_chr8_41312303_41312921
          Length = 619

 Score =  408 bits (211), Expect = e-118
 Identities = 217/219 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagaaagatgttgaaataacagtcttattcacaagattgggaaggacttaaaactcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gcagaaagatgttgaaataacagtcttattcacaagattgggaaggacttaaaactcttt 360

                                                                       
Query: 61  ggttcttccagttaatggccattgtttatttatttttaatcctcattgagtatgtggtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ggttcttccagttaatggccattgtttatttatttttaatcctcattgagtatgtggtca 300

                                                                       
Query: 121 cagacacaaagaagtaggcaaatactacttcttttcctccttcctgctccaatttcaatg 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aagacacaaagaagtaggcaaatactacttcttttcctccttcctgctccaatttcaatg 240

                                                  
Query: 181 tgttctctgcctgccaggctctggtcttcatgttgaggg 219
           |||||||||||||||||||||||| ||||||||||||||
Sbjct: 239 tgttctctgcctgccaggctctgggcttcatgttgaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)