BAC Information

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BAC

Clone NameMSMg01-476F22
Chromosome8 (Build37)
Map Location 125,829,718 - 126,037,594
singlet/doubletdoublet
Overlap geneFanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1
Upstream geneZfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276
Downstream geneGas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476F22.T7 (MSMg01no476_f22.b1)MSMg01-476F22.TJ (MSMg01no476_f22.g1)
ACCAG557978AG557979
length792780
length of high quality
(start - end)
249 (68 - 316)246 (71 - 316)
definitionCHROMAT_FILE: MSMg01no476_f22.b1 PHD_FILE: MSMg01no476_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:27 2005CHROMAT_FILE: MSMg01no476_f22.g1 PHD_FILE: MSMg01no476_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,037,346 - 126,037,594)(125,829,718 - 125,829,963)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTC
TCTCTTGTTGCCTTTAGCGTGTTTTCTTGTCTGCATCCTGAGCTAGTGGG
CTGTGCTTGGTGGGGCTCCCTAAGGGTGACTGTAATGGTAACTTTGTTTT
GGAGCCTGTGAAACACAAAAAAGGCAGAGCCCAGGAGGATGGAGCTCTGT
GTTCCATCTCCCAGGCCCGCAGCAGGGCTCGCTCATACAGACCTTGCCAG
CCTTCCTCTAGTACTCCGCATTAAATCTAGACCTGTTATTCATCAGTAGC
CACTGAAGAAATGATCTTTTTTAAGTAAAATCTTTATAATGTATCATTAA
GCCAGGGTCTATGTAGCCCTGGCTACCCTGGATCTTGCTATGTAGACCAG
GCTTAACCCCCACCTCCTTAGTCTAAAGGTGTGTGTACCATCATGCCAAG
CCTAATAGACAATTTTTAAACCTAAAGAATTTAGGGGATGGGAAAGGTGA
CATTAGGTAGCCCTGGCTGGTCTGTAGTTCGGAGGTCTGCCTGCTTTCAG
CTCTTGAGCGCTGGGATTATAGGTATGCCCCATCATTCTCCAGGNAATAT
TTTCCTTTAAGCATGGGAACACGGACCTGATTCACGTGCATGTAAATGTT
AAAGCTTGTTTTTCTTCTTGTAGAAGCCCCCTCGAATTCCTTTGGGTTAC
TACGTTCTTGTCTTTTCCCTCATTTCTAACGACGCCACGTTGTCCCTTTT
TATCCCCTATAAATTATTTTATTTTTTTTTTCTCCTTTTTTT
TGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGTTACCACGCCACAGCACGTATGTCCG
GAGTAGATAGGAATCCTGCAAATGACATGAGGGGGTGGCCAAGAGGGAAA
GCACTGTTCATAGCCGGGATCCTGTCCAAGAACCAACGGGGCTCACCATC
ATGCAAGCCAGGAAATCACTTTCTCAACCAGGCCATGAAGCCACACGTGT
CTAATGAATCATGGGACATGTGGTTTCATCAAGAGAGAAGTGAGCCATCT
TAGGATGTCAAGAGTCCTGTATTTGGGCAGGAGATTAGACACACTAGGAA
GGCAGGAGCTGCATACCACAGCGGAAGACAGACACGTGGGAGGGAGGTCA
CACACACAGGACAGAAAAGTGGGCCTGAAGGACCTTCAGGGTCCCACATC
CTAGAAATCTGGAGGCTGAACAGGATTCTACAATAAGAAAGAGAACTCAT
GCCCTACCTCAGAAAAGGCTGGAGAGACCCCCTGGGCTTTAGCAACAATC
TTCCCCGAGGTCTCCAACCAGCAGAGGGTACCCAGCTGTCTACTGCTACC
ACCCAAGAGCTCAAGATGCCCTGCTTCTTAGCCCACGCACGAACGCCTCC
TCCTCCAATATTTTTCTCTCCAAACGTACTATTTCACTCCCTTGCTGGTC
TTCCCAAGTTCTTCTGTTGGTCCTCCCCCTCTTGCTATTTTTGCGTTTTT
TGATTCCCCACTTTTTTCTGGTATTACCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_f22.b1 MSMg01no476_f22.b1 CHROMAT_FILE:
MSMg01no476_f22.b1 PHD_FILE: MSMg01no476_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:27 2005
         (249 letters)



>mm_chr8_126037146_126037794
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgtgttttcttgtctgcatcctgagctagtgggctgtgcttggtggggctccctaagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cgtgttttcttgtctgcatcctgagctagtgggctgtgcttggtggggctccctaagggt 390

                                                                       
Query: 61  gactgtaatggtaactttgttttggagcctgtgaaacacaaaaaaggcagagcccaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gactgtaatggtaactttgttttggagcctgtgaaacacaaaaaaggcagagcccaggag 330

                                                                       
Query: 121 gatggagctctgtgttccatctcccaggcccgcagcagggctcgctcatacagaccttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gatggagctctgtgttccatctcccaggcccgcagcagggctcgctcatacagaccttgc 270

                                                                       
Query: 181 cagccttcctctagtactccgcattaaatctagacctgttattcatcagtagccactgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cagccttcctctagtactccgcattaaatctagacctgttattcatcagtagccactgaa 210

                    
Query: 241 gaaatgatc 249
           |||| ||||
Sbjct: 209 gaaacgatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no476_f22.g1 MSMg01no476_f22.g1 CHROMAT_FILE:
MSMg01no476_f22.g1 PHD_FILE: MSMg01no476_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:28 2005
         (246 letters)



>mm_chr8_125829518_125830163
          Length = 646

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgttaccacgccacagcacgtatgtccggagtagataggaatcctgcaaatgacatga 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgttaccacaccacagcacgtatgtccggagtagataggaatcctgcaaatgacatga 260

                                                                       
Query: 61  gggggtggccaagagggaaagcactgttcatagccgggatcctgtccaagaaccaacggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggggtggccaagagggaaagcactgttcatagccgggatcctgtccaagaaccaacggg 320

                                                                       
Query: 121 gctcaccatcatgcaagccaggaaatcactttctcaaccaggccatgaagccacacgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcaccatcatgcaagccaggaaatcactttctcaaccaggccatgaagccacacgtgt 380

                                                                       
Query: 181 ctaatgaatcatgggacatgtggtttcatcaagagagaagtgagccatcttaggatgtca 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaatgaatcatgggacatgtggtttcatcaagagagaagtgagccatcttaggatgtca 440

                 
Query: 241 agagtc 246
           ||||||
Sbjct: 441 agagtc 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)