Query= MSMg01no477_m09.b1 MSMg01no477_m09.b1 CHROMAT_FILE:
MSMg01no477_m09.b1 PHD_FILE: MSMg01no477_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:19 2005
(324 letters)
>mm_chr8_68335380_68336103
Length = 724
Score = 497 bits (257), Expect = e-145
Identities = 301/321 (93%), Gaps = 10/321 (3%)
Strand = Plus / Minus
Query: 1 tttaaattgaattacccaaggaggcagaaaccaataagggccagggagagaatttaaaag 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 438 tttaaattgaattacccaaggaggcagaaactaataagggccagggagagaatttaaaag 379
Query: 61 gaagatgatccaatacaattagtacgaaagggaaaggcaataatgtagttgtaaagggaa 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 378 gaagatgatccaatacaattagtacaaaagggaaaggcaataatgtagttgtaaagggaa 319
Query: 121 agtgggatgggagatagaaggtcatggtggaagtgaggatagtggatgggatagctagca 180
|||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||
Sbjct: 318 agtgggatgggagatagaaggtcatggttgaagtgaggatagtggacgggatacctagca 259
Query: 181 ctaaagccttttcgagaagcttcacggaaatcctccatcttagagactttctcaaatacg 240
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 258 ctaaagcctttttgagaagcttcacggaaatccttcatcttagagactttctcaaata-- 201
Query: 241 tatgtatgtatgtatgtgcataggtgtgtgt--gtatatatatgtatatgtatatatata 298
||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||
Sbjct: 200 ------tgtatgtatgtgcataggtatgtgtatgtatatatatatatatatatatatata 147
Query: 299 tatatatatatatatatatat 319
|||||||||||||||||||||
Sbjct: 146 tatatatatatatatatatat 126
Score = 99.3 bits (51), Expect = 3e-25
Identities = 73/81 (90%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 241 tatgtatgtatgtatgtgcataggtgtgtgtgtata--tatatgtatatgtatatatata 298
||||||| ||| ||||| ||| ||||||||||||| ||||||||||| ||||||||||
Sbjct: 65 tatgtatatatatatgtatatatgtgtgtgtgtatatgtatatgtatatatatatatata 124
Query: 299 tatatatatatatatatatat 319
|||||||||||||||||||||
Sbjct: 125 tatatatatatatatatatat 145
Score = 80.0 bits (41), Expect = 2e-19
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 271 tgtatatatatgtatatgtatatatatatatatatatatatatatatat 319
||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 107 tgtatatatatatatatatatatatatatatatatatatatatatatat 155
Score = 76.1 bits (39), Expect = 3e-18
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 273 tatatatatgtatatgtatatatatatatatatatatatatatatat 319
||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 111 tatatatatatatatatatatatatatatatatatatatatatatat 157
Score = 76.1 bits (39), Expect = 3e-18
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 273 tatatatatgtatatgtatatatatatatatatatatatatatatat 319
||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 113 tatatatatatatatatatatatatatatatatatatatatatatat 159
Score = 76.1 bits (39), Expect = 3e-18
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 273 tatatatatgtatatgtatatatatatatatatatatatatatatat 319
||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 115 tatatatatatatatatatatatatatatatatatatatatatatat 161
Score = 76.1 bits (39), Expect = 3e-18
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 273 tatatatatgtatatgtatatatatatatatatatatatatatatat 319
||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 117 tatatatatatatatatatatatatatatatatatatatatatatat 163
Score = 76.1 bits (39), Expect = 3e-18
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 273 tatatatatgtatatgtatatatatatatatatatatatatatatat 319
||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 119 tatatatatatatatatatatatatatatatatatatatatatatat 165
Score = 76.1 bits (39), Expect = 3e-18
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 273 tatatatatgtatatgtatatatatatatatatatatatatatatat 319
||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 121 tatatatatatatatatatatatatatatatatatatatatatatat 167
Score = 76.1 bits (39), Expect = 3e-18
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 273 tatatatatgtatatgtatatatatatatatatatatatatatatat 319
||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 123 tatatatatatatatatatatatatatatatatatatatatatatat 169
Score = 76.1 bits (39), Expect = 3e-18
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 273 tatatatatgtatatgtatatatatatatatatatatatatatatat 319
||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 125 tatatatatatatatatatatatatatatatatatatatatatatat 171
Score = 74.2 bits (38), Expect = 1e-17
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 273 tatatatatgtatatgtatatatatatatatatatatatatatata 318
||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 127 tatatatatatatatatatatatatatatatatatatatatatata 172
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 98
Number of extensions: 41
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 12
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space: 225225
Effective search space used: 225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_m09.g1 MSMg01no477_m09.g1 CHROMAT_FILE:
MSMg01no477_m09.g1 PHD_FILE: MSMg01no477_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:19 2005
(653 letters)
>mm_chr8_68183542_68184594
Length = 1053
Score = 1201 bits (621), Expect = 0.0
Identities = 645/653 (98%)
Strand = Plus / Plus
Query: 1 ttctgaagaggagttagtgggtcttcagtctttcttcttggtttattctttcctatcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgaagaggagttagtgggtcttcagtctttcttcttggtttattctttcctatcagc 260
Query: 61 tcacacctatcaccaacatcaatatgatgtagatgttggtaagagtgacctatctctgag 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tcacacctatcaccaacatcaatatgatggagatgttggtaagagtgacctatctctgag 320
Query: 121 cactgtcctgtatgtctgggtgttcaggagctccttcaatgccttcactttgactcctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactgtcctgtatgtctgggtgttcaggagctccttcaatgccttcactttgactcctgg 380
Query: 181 aaggcaatgagtctaaaaaacctttcctagcatcagtttcttggtagagtgaggatgcag 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggcaacgagtctaaaaaacctttcctagcatcagtttcttggtagagtgaggatgcag 440
Query: 241 gtcttatcatctttgttaataaactttgttctcacatctgctgttactgtttttcagaca 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcttaccatctttgttaataaactttgttctcacatctgctgttactgtttttcagacg 500
Query: 301 gcatggcacatcttcaatggactcacagacttcctcaaggttgtactcattcctgagtag 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtatggcacatcttcaatggactcacagacttcctcaaggttgtactcattcctgagtag 560
Query: 361 ttatgggcaccaatgctttttgtgaggtcctggcattatcttcctagttttccttctttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatgggcaccaatgctttttgtgaggtcctggcattatcttcctagttttccttctttt 620
Query: 421 tttgttttttatttttaattttttattaggtatttatttcatttacatttccactgctat 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 621 tttgttttttatttttaattttttattaggtatttatttcatttacctttccaatgctat 680
Query: 481 cccaaaagtcccccacaccctcccccacccactcccttacccacccactcccacttcttg 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 cccaaaagtcccccacaccctcccccacccactcccctacccacccactcccacttcttg 740
Query: 541 gccctggcgttcccctgtactgaggcatataaagtttgcacgaccaatggacctctttcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gccctggcgttcccctgtactgaggcatataaagtttgcacgaccaatggacctctttcc 800
Query: 601 actgatggcccgactaggccatcttctgattcatatgcagctagagacacaag 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 actgatggcccgactaggccatcttctgattcatatgcagctagagacacaag 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
