Query= MSMg01no478_h17.b1 MSMg01no478_h17.b1 CHROMAT_FILE:
MSMg01no478_h17.b1 PHD_FILE: MSMg01no478_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:13 2005
(244 letters)
>mm_chr8_123666233_123666882
Length = 650
Score = 429 bits (222), Expect = e-125
Identities = 239/248 (96%), Gaps = 6/248 (2%)
Strand = Plus / Minus
Query: 1 tctacatgcatccagagcccactggagacacagatgtgaatagtgaaaggagacgaattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tctacatgcatccagagcccactggagacacagatgtgaatagtgaaaggagacgaattc 389
Query: 61 cggcacttcagtgcctgcgtttgcctcccagccagccacacctggagagctgtatgatac 120
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 388 cggcacctcagtgcctgcgtttgcctcccagccagccacacctagagagctgtatgatac 329
Query: 121 tggtaactctccagcttccttgacatcgagcctccagcttctgggaagggggggg----- 175
||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 328 tggtaactctccagcttccctgacatcgagcctccagcttctgggaagggggggggggga 269
Query: 176 -agggggaatgggaacggcagccttgcatgagtccacacttgctgaggctgtagtgctta 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cagggggaatgggaacggcagccttgcatgagtccacacttgctgaggctgtagtgctta 209
Query: 235 ggcagtac 242
||||||||
Sbjct: 208 ggcagtac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 650
Length adjustment: 9
Effective length of query: 235
Effective length of database: 641
Effective search space: 150635
Effective search space used: 150635
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no478_h17.g1 MSMg01no478_h17.g1 CHROMAT_FILE:
MSMg01no478_h17.g1 PHD_FILE: MSMg01no478_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:13 2005
(636 letters)
>mm_chr8_123481098_123482132
Length = 1035
Score = 1185 bits (613), Expect = 0.0
Identities = 630/639 (98%), Gaps = 7/639 (1%)
Strand = Plus / Plus
Query: 1 ctctctagggaccaggctggccccgggagctcccagggtctgggtagtttttgaggggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctctagggaccaggctggccccgggagctcccagggtctgggtagtttttgaggggcc 260
Query: 61 cagtgaccttctccacaaacaaacacatcagagctcttccttccgcccttccaatagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtgaccttctccacaaacaaacacatcagagctcttccttccgcccttccaatagagg 320
Query: 121 cagataaacagagcagttccctagccagacaccagtcacctgcagaagcgtccagaagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagataaacagagcagttccctagccagacaccagtcacctgcagaagcgtccagaagtc 380
Query: 181 tctgccagagactcatctagggtccccccctgcccccgacacacacaggccatcccatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgccagagactcatctagggtccccccctgcccccgacacacacaggccatcccatta 440
Query: 241 aatgtttt---gtgcagaagctgctgagcttctgagatgtcccagcctggtgaccctgca 297
|||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatg----caggtgcagaagctgctgagcttctgagatgtcccagcctggtgaccctgca 496
Query: 298 tctctcacctcctggctgccttgagaccaaataggatgcaaactggaacaattcctccat 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tctctcacctcctggctgccttgagaccaaataggatgcaaactggaacaattcctccat 556
Query: 358 tctggaccacttgtcctgagcatctgggagtgctgtcccctgcttaccaccagctactgt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tctggaccacttgtcctgagcatctgggagtgctgtcccctgcttaccaccagctactgt 616
Query: 418 catctgtgaatggcaacaagcaggaaagagatggaactggtacctgacagagttggggta 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 catctgtgaatggcaacaagcaggaaagagatggaactggtacctgacagagttggggta 676
Query: 478 ggggacaccccagggacagatcaacccaggaggacccacccttgtccctggaaggtttaa 537
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggggacactccagggacagatcaacccaggaggacccacccttgtccctggaaggtttaa 736
Query: 538 gagccattaagataaaatcaagaggctcattggaatctaccaccaaccccaagatgtcag 597
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 737 gagccattaagataaaatcaagagactcattggaatctaccaccaaccccaagatgtcag 796
Query: 598 ggttgtatagcatgagactacacagatagagaaactgag 636
|||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ggttgtatagcatgagactacacagatagagaaactgag 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1035
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1025
Effective search space: 641650
Effective search space used: 641650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
