BAC Information

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BAC

Clone NameMSMg01-479I07
Chromosome8 (Build37)
Map Location 29,037,343 - 29,230,939
singlet/doubletdoublet
Overlap geneEG666422
Upstream geneZfp703, Erlin2, Prosc, Gpr124, Brf2, Rab11fip1, Got1l1, Adrb3, Eif4ebp1, LOC732482, Tex24, Chrnb3, Chrna6, 4921537P18Rik, Gm1698
Downstream geneLOC666430, EG666446, LOC100042598, Unc5d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479I07.T7 (MSMg01no479_i07.b1)MSMg01-479I07.TJ (MSMg01no479_i07.g1)
ACCAG560379AG560380
length774763
length of high quality
(start - end)
606 (68 - 673)588 (77 - 664)
definitionCHROMAT_FILE: MSMg01no479_i07.b1 PHD_FILE: MSMg01no479_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:33 2005CHROMAT_FILE: MSMg01no479_i07.g1 PHD_FILE: MSMg01no479_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,230,638 - 29,230,939)(29,037,343 - 29,037,930)
sequence
GGGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCG
CGGAANNCNCNGATTTCATATATTTTTATGATTTAATAAATATGAAAGCA
ATTTTCATACTAATGAGATGGATATACTTGTTTTTAGACAAAAAAAAAGC
AACTTAAGTCTTAACTGAATATTTGAGACTGTAGGTCATAGGACATCTAT
GATGCTTTCCAGAGTAGATCAATATTATAATTCTTAAATTATCAATACTG
AAAACACAAGTTGACATAAAGTGTAGGATTAAATGAAAGAAGTATGCTCA
GGGTTATTTCAGAAATCACTGAAAATTCTGTCCTAATCCCAATAATAATT
TCATTTAACAATATTTTTAATGAAACTAAAATTACCAACCCAAGCAAACA
CATCCCAGGTACAAAATGGCCAGCCTGGCTAGCCAATCAATGAGCTCTGT
GAAAAGTCATTTCTCAATAAATAAAATTGAGAATGACAAAAGAAGACACC
TGACTTCAACAAGTATGTACACACATGTGTTATCTAACTGTACATACATG
CATACATACATACATACATACCCTAAATGTATCCTTGCTTGAAAACGCAT
TTGATCCATCTAACAAATAGCCTAACTTGCACTTGTCTTTTTGAATTGTA
CTCATGCTGAAAGCTTACATTAATTGGCCAATTTTGGTTAAAAATCATCT
AAAACAAATTCTACCTGACAATAAAGGGCTGAATGTCTTATGTAATTTGC
TGAATAAATANTGGAAGTCAAAAA
NGGTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGCTGCAAAATTCCTTAACTTGCATTCTGTTCC
CTGAGAATGAACAAATGGATGAGAGAAAACTGTTGACTTTCCAGGCCTTG
AAGGCTGAGGACAGTATTGTGACAGTCCTTTTCCTTATTTCCTCTTTGTT
ATTGAGAAAATATGTAGGGAGACAGCCTATCAAGCCTACTTGAGGGTCTT
GGGGTGGAAGGGTATTAAAGGATTCCCAGTTCAATTTGTGCATTTGATTT
CCCCACCGCCTATCTCCTCCTAAGGTTATTTAATGTTCACTAAACATGAG
AGCACACACGTCTTCATACAATACAGACATGATAGTCCTCTTGCTGCTCT
TTTTGGGCAGAGTGGACAGATGGCTTCTATACTAAATCTCTTGTAGAATA
TCACTTGTTAAATTCTTCTTTATGCAGAAATAAACAGAGTTTATTGTCTG
AAAGGTGGAGATTTCACAGATTCCTCGCATTTTCCTACCTCAAAAGCATG
GTCTCTGAGGCTTGGCGGGTGGCTCTGCTCTTATCCCTGAGAGGGTCTGG
AGGCCAGGAACTCCTGCCTCCACTCAGTGAGAGCCTCTGGGAAGCTCTCT
TCTTGAACCATTGTTCATTGTCTTTTCTACATAGTCTGGGTTTGAATGAT
CCCAGGGCTTCTAATCAGCAAGAAAATTATAATGCCACATTTCTGTGGAT
TCTTAACTCAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_i07.b1 MSMg01no479_i07.b1 CHROMAT_FILE:
MSMg01no479_i07.b1 PHD_FILE: MSMg01no479_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:33 2005
         (606 letters)



>mm_chr8_29229934_29230939
          Length = 1006

 Score =  584 bits (302), Expect = e-171
 Identities = 302/302 (100%)
 Strand = Plus / Minus

                                                                        
Query: 305  gaaactaaaattaccaacccaagcaaacacatcccaggtacaaaatggccagcctggcta 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 gaaactaaaattaccaacccaagcaaacacatcccaggtacaaaatggccagcctggcta 947

                                                                        
Query: 365  gccaatcaatgagctctgtgaaaagtcatttctcaataaataaaattgagaatgacaaaa 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  gccaatcaatgagctctgtgaaaagtcatttctcaataaataaaattgagaatgacaaaa 887

                                                                        
Query: 425  gaagacacctgacttcaacaagtatgtacacacatgtgttatctaactgtacatacatgc 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  gaagacacctgacttcaacaagtatgtacacacatgtgttatctaactgtacatacatgc 827

                                                                        
Query: 485  atacatacatacatacataccctaaatgtatccttgcttgaaaacgcatttgatccatct 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826  atacatacatacatacataccctaaatgtatccttgcttgaaaacgcatttgatccatct 767

                                                                        
Query: 545  aacaaatagcctaacttgcacttgtctttttgaattgtactcatgctgaaagcttacatt 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766  aacaaatagcctaacttgcacttgtctttttgaattgtactcatgctgaaagcttacatt 707

              
Query: 605  aa 606
            ||
Sbjct: 706  aa 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no479_i07.g1 MSMg01no479_i07.g1 CHROMAT_FILE:
MSMg01no479_i07.g1 PHD_FILE: MSMg01no479_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:33 2005
         (588 letters)



>mm_chr8_29037143_29038130
          Length = 988

 Score = 1098 bits (568), Expect = 0.0
 Identities = 583/588 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccttaacttgcattctgttccctgagaatgaacaaatggatgagagaaaactgttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attccttaacttgcattctgttccctgagaatgaacaaatggatgagagaaaactgttga 260

                                                                       
Query: 61  ctttccaggccttgaaggctgaggacagtattgtgacagtccttttccttatttcctctt 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttccaggccttgaaggctgagaacagtattgtgacagtccttttccttatttcctctt 320

                                                                       
Query: 121 tgttattgagaaaatatgtagggagacagcctatcaagcctacttgagggtcttggggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttattgagaaaatatgtagggagacagcctatcaagcctacttgagggtcttggggtg 380

                                                                       
Query: 181 gaagggtattaaaggattcccagttcaatttgtgcatttgatttccccaccgcctatctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagggtattaaaggattcccagttcaatttgtgcatttgatttccccaccgcctatctc 440

                                                                       
Query: 241 ctcctaaggttatttaatgttcactaaacatgagagcacacacgtcttcatacaatacag 300
           |||||||||| ||  |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 ctcctaaggtaatggaatgttcactaaacatgagagcacacgcgtcttcatacaatacag 500

                                                                       
Query: 301 acatgatagtcctcttgctgctctttttgggcagagtggacagatggcttctatactaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatgatagtcctcttgctgctctttttgggcagagtggacagatggcttctatactaaa 560

                                                                       
Query: 361 tctcttgtagaatatcacttgttaaattcttctttatgcagaaataaacagagtttattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctcttgtagaatatcacttgttaaattcttctttatgcagaaataaacagagtttattg 620

                                                                       
Query: 421 tctgaaaggtggagatttcacagattcctcgcattttcctacctcaaaagcatggtctct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgaaaggtggagatttcacagattcctcgcattttcctacctcaaaagcatggtctct 680

                                                                       
Query: 481 gaggcttggcgggtggctctgctcttatccctgagagggtctggaggccaggaactcctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaggcttggcgggtggctctgctcttatccctgagagggtctggaggccaggaactcctg 740

                                                           
Query: 541 cctccactcagtgagagcctctgggaagctctcttcttgaaccattgt 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctccactcagtgagagcctctgggaagctctcttcttgaaccattgt 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)