BAC Information

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BAC

Clone NameMSMg01-479P15
Chromosome8 (Build37)
Map Location 122,854,156 - 122,854,519
singlet/doubletsinglet
Overlap genenone
Upstream geneHsbp1, Mlycd, Osgin1, Efcbp2, Gm587, Mbtps1, Hsdl1, Lrrc50, Taf1c, EG628061, 4930403J07Rik, Kcng4, Wfdc1, Atp2c2, 4632415K11Rik, Cotl1, BC025816, Usp10, Crispld2, Zdhhc7, 6430548M08Rik, 1700120B06Rik
Downstream geneGse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb, Cox4i1, Irf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479P15.T7 (MSMg01no479_p15.b1)MSMg01-479P15.TJ (MSMg01no479_p15.g1)
ACCAG560727AG560728
length770759
length of high quality
(start - end)
629 (68 - 696)364 (322 - 685)
definitionCHROMAT_FILE: MSMg01no479_p15.b1 PHD_FILE: MSMg01no479_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:09 2005CHROMAT_FILE: MSMg01no479_p15.g1 PHD_FILE: MSMg01no479_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGACATTACAATTTCTCCCAAATTTCCATCCCAGAAACACACAGA
CCCTTACGGACAAGAAGTGCACAACCTGGGGCTGGAGAGATGGCTCAGTG
ATTAAGAGCACTGACTGCTCTTCCAAAGGTCATGAGTTCAATCCCCAGAA
ACCATATGGAGGCCCACAACCATCTGTAATGTGATCTGATGCCCTCTTCT
GGTGTGTCTGAAGACAGCTACAGTGTAACAGTGTGTACTTAGATATAATA
ATAAAATAAAATCTTAAATATTTTAAGTGCACCACCTGCCAGGTGTCTTT
ATTCCTGGTACTCAGGAGCAGAGGCAGCTGGATCTCTGTGAGTTTGAGGC
CAGCCTGATCTACCTACAAGGTCCAGGAAAGCCAGGGCTACACAGTGAAA
CCTTGTCTCCTGGGGGACAGAAGCTGCTACCTCTGGGCCACCTGCTCTGG
TCTTGGGCCTGTGCTGAACACAGCCATCGAACACCCCAGAATTCACAAAG
TTTGTATTGTTTTTCCAGACAGGGTTTCTCTGTGTACCCTTGGCTGTTCT
GGAACTCACTCTGTAGACCATGCTGGACTTGAACTCAGAGATTCACCTAT
CTCTGAGTGCCTGAGTTAAGCCATCATCACGCCCAGCTGGTATGAGGCTC
CACTGTGCTACGGGGACAACGAGGCTCAGACAGAACATGGCATCTTTTAA
TGACCCTGAGAACCAGCCTC
CAATACAGTGTGTAGGCCTGGGGGCCGCCTGGTCGACAAATGTAGGTGAA
CTATAGAAGTATCCGAGAAATTCTCCAGCCAGATGTCAGGAGGCACAGCT
GTGCTCAGGCTCACAGGTACAATCTGCATGGCACACAGTGGGTGTCTGAA
AAAACCAGAGATGTGCTCTCTCCCACTCATAGAGGGACAGAGGGACAGGG
CGCTGTCTCCTTAGAGAACTCCCAAGTGTATCCTCCTGTTCTCTCTAGGC
TCGCAGGGGCTCCAGCACTCCTTGGCTTAAGGACTTGTCACTCTGTGTGG
CCTCCCTGGCTCTTTTTATCTCAGAGATACTTCCATTGGACAGCCTGTCC
CCCATGCCATGGTGACTCCATCCTTATATCTATGTCTACATGGGATTCTG
GGGTACATGACTTTGAGGGGACATTTAAGGCAATACACTTGTTCTACCAG
ATGTCTTCACACCGGTTAGGTGTCTCTTCCTCCTCCCTCTCTGCTGCTGT
GACCCATGAACCTCTTGGCTGCCTTCCTAGTACCAAACATGCTTCTGCCC
CAGGGCCTTTGCACCTGCTGTCTGTCCCACCCAGACTACACTTGAACAAT
CTGAGCTTGCCGCCTGTGCACCCACGTTGTGACTTTTTGTCCTTGGTTTC
TAAAATGTTTCCTGGCATCTAGAATCTTCTCAGATCAGTCTGCAGGCTGA
ACAGATGATCCTGTGGGTCACACTTCCAGGTGGTGGTGTCCAGGAGCCTC
CTCAGTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_p15.g1 MSMg01no479_p15.g1 CHROMAT_FILE:
MSMg01no479_p15.g1 PHD_FILE: MSMg01no479_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:09 2005
         (364 letters)



>mm_chr8_122853956_122854719
          Length = 764

 Score =  642 bits (332), Expect = 0.0
 Identities = 356/364 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagatacttccattggacagcctgtcccccatgccatggtgactccatccttatatct 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 cagagatacttccattggacagcctgtcccccatgccatgatgactccatccttatatct 260

                                                                       
Query: 61  atgtctacatgggattctggggtacatgactttgaggggacatttaaggcaatacacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtctacatgggattctggggtacatgactttgaggggacatttaaggcaatacacttg 320

                                                                       
Query: 121 ttctaccagatgtcttcacaccggttaggtgtctcttcctcctccctctctgctgctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctaccagatgtcttcacaccggttaggtgtctcttcctcctccctctctgctgctgtg 380

                                                                       
Query: 181 acccatgaacctcttggctgccttcctagtaccaaacatgcttctgccccagggcctttg 240
           ||||||||||||||||||||||||||||||||||| || || |||||||| |||||||||
Sbjct: 381 acccatgaacctcttggctgccttcctagtaccaagcacgcctctgcccctgggcctttg 440

                                                                       
Query: 241 cacctgctgtctgtcccacccagactacacttgaacaatctgagcttgccgcctgtgcac 300
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 441 cacctgctgtctgtcccacccagactacacttgaacaatctgagcttgtcgcctgtgcgc 500

                                                                       
Query: 301 ccacgttgtgactttttgtccttggtttctaaaatgtttcctggcatctagaatcttctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 501 ccacgttgtgactttttgtccttggtttctaaaatgtttcctggcatctagaatcttctt 560

               
Query: 361 agat 364
           ||||
Sbjct: 561 agat 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)