Query= MSMg01no480_f11.b1 MSMg01no480_f11.b1 CHROMAT_FILE:
MSMg01no480_f11.b1 PHD_FILE: MSMg01no480_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:37 2005
(527 letters)
>mm_chr8_125363228_125364155
Length = 928
Score = 752 bits (389), Expect = 0.0
Identities = 468/527 (88%), Gaps = 53/527 (10%)
Strand = Plus / Plus
Query: 2 gggaggtttaataaagtagaggtgtcagcctggctaattttcagggatagactacaaaag 61
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 202 gggaggtttaataaagtagaggtgtcagcctggctgattttcagggatagactacaaaag 261
Query: 62 agaaattcatctgcata-ttgtataagcttgggtttaggcagagacaaagagagtaaatc 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agaaattcatctgcatatttgtataagcttgggtttaggcagagacaaagagagtaaatc 321
Query: 121 agaggccagagcctggccaagtaaactcgggctgtccccaagcccctggggtaggactgt 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 322 agaggccagagcctggccaagtaaactcaggctgtccccaagcccctggggtagga---- 377
Query: 181 ccgagtgagctggtgtccccaagcccctagggtaggactgtccgagtgagctgggtagga 240
||||||||||||||
Sbjct: 378 ----------------------------------------------tgagctgggtagga 391
Query: 241 tggtgtgttgtccatgtcagtcaagtaaaggcaaagatatcttgtgactggggttgagaa 300
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tggtg-ggtgtccatgtcagtcaagtaaaggcaaagatatcttgtgactggggttgagaa 450
Query: 301 gaactgaaaaaaaaatcaacctaaggtctacaggaaatgggggcccgtgaggggactgtg 360
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gaactg-aaaaaaaggcaacctaaggtctacaggaaatgggggcccgtgaggggactgtg 509
Query: 361 gagaggagaatagagggttcgtgtactgcagggtggagaggagccactgcagagttgtca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gagaggagaatagagggttcgtgtactgcagggtggagaggagccactgcagagttgtca 569
Query: 421 ggtcagaggtcctgagccaagctgtcggtgctatggagcttttaactgtgagtaagaggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ggtcagaggtcctgagccaagctgtcggtgctatggagcttttaactgtgagtaagaggg 629
Query: 481 ggctaaagtgagaagacacggggcacagacgaccttttcttaagagg 527
|||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 630 ggctaaagtgagaagacacggggcacagacgaccctttcttaagagg 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 928
Length adjustment: 10
Effective length of query: 517
Effective length of database: 918
Effective search space: 474606
Effective search space used: 474606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_f11.g1 MSMg01no480_f11.g1 CHROMAT_FILE:
MSMg01no480_f11.g1 PHD_FILE: MSMg01no480_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:37 2005
(231 letters)
>mm_chr8_125550657_125551287
Length = 631
Score = 447 bits (231), Expect = e-130
Identities = 231/231 (100%)
Strand = Plus / Minus
Query: 1 gttttcaggggacttgccagtgatgagactgttgccctgggaacaagggggacccagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gttttcaggggacttgccagtgatgagactgttgccctgggaacaagggggacccagagg 372
Query: 61 aatccactgtacatacagttgtcaaaggctgcatggctgtttagtgcttatgcagctgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aatccactgtacatacagttgtcaaaggctgcatggctgtttagtgcttatgcagctgga 312
Query: 121 ctagagcttttgtatggtttgagtattcaaggtttagttctgctgagtgccaggtttggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctagagcttttgtatggtttgagtattcaaggtttagttctgctgagtgccaggtttggt 252
Query: 181 agcacacacctcattccagtgcttgggagactctagaccactttgggctac 231
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agcacacacctcattccagtgcttgggagactctagaccactttgggctac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space: 138084
Effective search space used: 138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
