Query= MSMg01no480_g01.b1 MSMg01no480_g01.b1 CHROMAT_FILE:
MSMg01no480_g01.b1 PHD_FILE: MSMg01no480_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:39 2005
(217 letters)
>mm_chr8_22392036_22392652
Length = 617
Score = 342 bits (177), Expect = 7e-99
Identities = 213/239 (89%), Gaps = 22/239 (9%)
Strand = Plus / Plus
Query: 1 gtagcgttccactatgtacacacataaacacacacacagagacacac------------- 47
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gtagcgttccactatgtacacacataaacacacacacagagacacacagagagagagaga 238
Query: 48 ---------acagagagagagagagagagagagatattttataatgtgagctacattctc 98
| ||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 239 gagagagagagagagagagagagagagagagagagattttataatgtgagccacattctc 298
Query: 99 tttatcaactcacctactgatggatatctcttggcaattatgtacaacatagagagctgc 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tttatcaactcacctactgatggatatctcttggcaattatgtacaacatagagagctgc 358
Query: 159 aatagacaaaatatctctgcagaatacacagtttacttctatttgaatgtttggttttc 217
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 359 aatagacaaaatatctctgcagaatacacagtttacttctatttgaatgttaggttttc 417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space: 126464
Effective search space used: 126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no480_g01.g1 MSMg01no480_g01.g1 CHROMAT_FILE:
MSMg01no480_g01.g1 PHD_FILE: MSMg01no480_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:40 2005
(648 letters)
>mm_chr8_22935766_22936813
Length = 1048
Score = 930 bits (481), Expect = 0.0
Identities = 487/489 (99%)
Strand = Plus / Minus
Query: 160 atatacctcagtagcaaacacacacactgatgaaaaagacagatccaaggtcaaagtatt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 atatacctcagtagcaaacacacacactgatgaaaaagacagatccaaggtcaaagtatt 989
Query: 220 gagcaaatgaatgttggatcaaccattttagtatctgacaaagttgacttcaattaaaag 279
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 988 gagcaaatgaatgttggatcaaccattttagtatctgacaatgttgacttcaattaaaag 929
Query: 280 aatcaaagagatcaagaaagccactacatattaaaaatgggattaatatgtcaagaagaa 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 aatcaaagagatcaagaaagccactacatattaaaaatgggattaatatgtcaagaagaa 869
Query: 340 attatatatatgtatatgcatatatatgtctatatatatgtattgactaactaacaggga 399
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 868 attatatatatgtatatgcatatatatgtatatatatatgtattgactaactaacaggga 809
Query: 400 tcttgatttcataaagcaaacattagtggacacaaaaggacatgtaggcctagataaaat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tcttgatttcataaagcaaacattagtggacacaaaaggacatgtaggcctagataaaat 749
Query: 460 agcaataggtgatttcaatacacctcttgtattagggtgaagtaaatgagaaagattcaa 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 agcaataggtgatttcaatacacctcttgtattagggtgaagtaaatgagaaagattcaa 689
Query: 520 agttgagtttcatcatagacacactcagaaatctatgtcaagaaaacctgtaaaatcata 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agttgagtttcatcatagacacactcagaaatctatgtcaagaaaacctgtaaaatcata 629
Query: 580 catctatagcaagaaaacctgtaaaatctatatgaatacactgaaatagaataatacatt 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 catctatagcaagaaaacctgtaaaatctatatgaatacactgaaatagaataatacatt 569
Query: 640 cttcatgat 648
|||||||||
Sbjct: 568 cttcatgat 560
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
