BAC Information

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BAC

Clone NameMSMg01-481F08
Chromosome8 (Build37)
Map Location 41,796,609 - 41,996,687
singlet/doubletdoublet
Overlap geneLOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2
Upstream geneEG621431, LOC100039072, LOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24
Downstream genePdgfrl, Mtus1, Fgl1, Pcm1, Asah1, Frg1, LOC100039376, Gm1815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481F08.T7 (MSMg01no481_f08.b1)MSMg01-481F08.TJ (MSMg01no481_f08.g1)
ACCAG561764AG561765
length769764
length of high quality
(start - end)		655 (37 - 691)473 (67 - 539)
definitionCHROMAT_FILE: MSMg01no481_f08.b1 PHD_FILE: MSMg01no481_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:56 2005CHROMAT_FILE: MSMg01no481_f08.g1 PHD_FILE: MSMg01no481_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,996,037 - 41,996,687)(41,796,609 - 41,797,079)
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTA
GCTGTTCATATTTTAGTAGACTGTTTTGTAGATGGGCCAAGCTCTTTGTA
GGAGTCAAACTGGACTTGATTCTTAGCTGAAGGCCAAGTCTGCTCCCATA
TTCAATACTACTATTTTAATGGCATGGCCTCCCATGTTGGTGACACTGCT
GCCTTTTAGAGTTCTCACTGTCCCTTCTTCCCACATCCCACCTGGTACAC
ACTCTTGAGAACCAATAGAGACTCACCTGAGAATAAGCACACAGGCTGCC
ACCAGAGAGTAGGCCATGAGGGTGCCAATAGACATCATGTCCACGAGGGC
CTTCAGGTCAAAAAGAAAGGCCATCACAGCTATTGGGAAACAGACAAGGA
AGTGAAACCAAGGCCTCTGGTGGCATTTCTTACAGTAGTTCATTTAGTCA
GGGACAAATGATTGACACTCTTCTGTTTTGGTACCAATGACAGATCATGT
TACATCATAAGATGTTTACTGGGACATACAACCTGCTAACACTAAGACAT
CAAAGCCCCTACCTAGTTCCTTAGCAAACACTAAATACATCGGCCTTGAT
TATTTAAAACCTGGCCTGGCCAAGAGTAAAAATATTAGATGACAGAACAC
TGTGTTTTGAGGTCTCAAAAGGTAAACAAACACTACCGAGAAATGCCAGC
CACTGCTGTTCACATCATAAGGAAAGCTAGGCTTCTGTATACAAGTTATG
CAAGTTCTTTACTTCCCAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTTCTCCTAGTTCTGTGAAGACTCAAATTGGGC
TTTTGGTGGGAATTGCATTGAATCTGTAGACTGTTTTTGTTAAGGTAGAC
ATTGTCTCTGAATTGGTCCTTCTGCTCTCTAGGCCGGAGAGCTTCTGGGA
GCTATGTTAGTGCCTTCTTCAACTGCTCTCTTCAGTGTTTTAAAGTTCCC
ATTGTGGAGGTCTTGCACATCATTGGTTGGGTTTATTACCAGGTCTTTGG
TTTTGATTTGTTTTGAGACAATTGCGAGTAAAATTGCTTCTCTAATTTCT
TCCTCAATATGGGTTTTGGTTTTTATGGTTTTGTTTGTTTGTTTGTTTGT
TTGTTTGTTTTTGTTTTTGCAATTGGCACTGTTATTTTATTTATTACAAT
AAACTTGTACTGATACACATACAATTTATTTAAAACAATTTTGTTCAAAT
TTTGAATCAAACATTGTTTTATTTATTTATTTATTGGNTTTTTNNNNNNN
NNNTTCTTTTTTTTNCTTTTGTTTTTTTTTTTTTCTCTTCTTCCCCTCTT
CTTCCTTTTTCCTCCCTTCTTTCCCCTCTCTCTTCCTCTCTCTTCTCTTC
ATCCTCCCTTTCTTTTTTTTTTCATCCTTCTTTCCTTTCCCCACCTCTAC
TTCTCATTACACTTCTCTCCTTAAATTTTTTTACTCCCTCTATATTTTTC
CCCCTCTTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_f08.b1 MSMg01no481_f08.b1 CHROMAT_FILE:
MSMg01no481_f08.b1 PHD_FILE: MSMg01no481_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:56 2005
         (655 letters)



>mm_chr8_41995833_41996887
          Length = 1055

 Score = 1243 bits (643), Expect = 0.0
 Identities = 649/651 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtagctgttcatattttagtagactgttttgtagatgggccaagctctttgta 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 gaattctgtagctgcacatattttagtagactgttttgtagatgggccaagctctttgta 796

                                                                       
Query: 65  ggagtcaaactggacttgattcttagctgaaggccaagtctgctcccatattcaatacta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ggagtcaaactggacttgattcttagctgaaggccaagtctgctcccatattcaatacta 736

                                                                       
Query: 125 ctattttaatggcatggcctcccatgttggtgacactgctgccttttagagttctcactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ctattttaatggcatggcctcccatgttggtgacactgctgccttttagagttctcactg 676

                                                                       
Query: 185 tcccttcttcccacatcccacctggtacacactcttgagaaccaatagagactcacctga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tcccttcttcccacatcccacctggtacacactcttgagaaccaatagagactcacctga 616

                                                                       
Query: 245 gaataagcacacaggctgccaccagagagtaggccatgagggtgccaatagacatcatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaataagcacacaggctgccaccagagagtaggccatgagggtgccaatagacatcatgt 556

                                                                       
Query: 305 ccacgagggccttcaggtcaaaaagaaaggccatcacagctattgggaaacagacaagga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ccacgagggccttcaggtcaaaaagaaaggccatcacagctattgggaaacagacaagga 496

                                                                       
Query: 365 agtgaaaccaaggcctctggtggcatttcttacagtagttcatttagtcagggacaaatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 agtgaaaccaaggcctctggtggcatttcttacagtagttcatttagtcagggacaaatg 436

                                                                       
Query: 425 attgacactcttctgttttggtaccaatgacagatcatgttacatcataagatgtttact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 attgacactcttctgttttggtaccaatgacagatcatgttacatcataagatgtttact 376

                                                                       
Query: 485 gggacatacaacctgctaacactaagacatcaaagcccctacctagttccttagcaaaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gggacatacaacctgctaacactaagacatcaaagcccctacctagttccttagcaaaca 316

                                                                       
Query: 545 ctaaatacatcggccttgattatttaaaacctggcctggccaagagtaaaaatattagat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctaaatacatcggccttgattatttaaaacctggcctggccaagagtaaaaatattagat 256

                                                              
Query: 605 gacagaacactgtgttttgaggtctcaaaaggtaaacaaacactaccgaga 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gacagaacactgtgttttgaggtctcaaaaggtaaacaaacactaccgaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no481_f08.g1 MSMg01no481_f08.g1 CHROMAT_FILE:
MSMg01no481_f08.g1 PHD_FILE: MSMg01no481_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:57 2005
         (473 letters)



>mm_chr8_41796409_41797281
          Length = 873

 Score =  911 bits (471), Expect = 0.0
 Identities = 471/471 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttctcctagttctgtgaagactcaaattgggcttttggtgggaattgcattgaatctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttctcctagttctgtgaagactcaaattgggcttttggtgggaattgcattgaatctg 260

                                                                       
Query: 61  tagactgtttttgttaaggtagacattgtctctgaattggtccttctgctctctaggccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagactgtttttgttaaggtagacattgtctctgaattggtccttctgctctctaggccg 320

                                                                       
Query: 121 gagagcttctgggagctatgttagtgccttcttcaactgctctcttcagtgttttaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagagcttctgggagctatgttagtgccttcttcaactgctctcttcagtgttttaaagt 380

                                                                       
Query: 181 tcccattgtggaggtcttgcacatcattggttgggtttattaccaggtctttggttttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccattgtggaggtcttgcacatcattggttgggtttattaccaggtctttggttttga 440

                                                                       
Query: 241 tttgttttgagacaattgcgagtaaaattgcttctctaatttcttcctcaatatgggttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgttttgagacaattgcgagtaaaattgcttctctaatttcttcctcaatatgggttt 500

                                                                       
Query: 301 tggtttttatggttttgtttgtttgtttgtttgtttgtttgtttttgtttttgcaattgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtttttatggttttgtttgtttgtttgtttgtttgtttgtttttgtttttgcaattgg 560

                                                                       
Query: 361 cactgttattttatttattacaataaacttgtactgatacacatacaatttatttaaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cactgttattttatttattacaataaacttgtactgatacacatacaatttatttaaaac 620

                                                              
Query: 421 aattttgttcaaattttgaatcaaacattgttttatttatttatttattgg 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aattttgttcaaattttgaatcaaacattgttttatttatttatttattgg 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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