BAC Information

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BAC

Clone NameMSMg01-481H23
Chromosome8 (Build37)
Map Location 119,611,503 - 119,611,750
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384868, LOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2
Downstream geneBcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481H23.T7 (MSMg01no481_h23.b1)MSMg01-481H23.TJ (MSMg01no481_h23.g1)
ACCAG561890AG561891
length785796
length of high quality
(start - end)
499 (45 - 543)248 (78 - 325)
definitionCHROMAT_FILE: MSMg01no481_h23.b1 PHD_FILE: MSMg01no481_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:09 2005CHROMAT_FILE: MSMg01no481_h23.g1 PHD_FILE: MSMg01no481_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAACTTTTCTGCTGGGGAACGAGAGTACCAGTGAGTACAGCTTTA
CGAGGTAAGCCTGGCCTTGAACTTTCTAAGGAAATTCAAGACAGTCTATC
AGAAGTAAAGTGGAAAATGTTTGGCCTTGAATTTTTTCTAGTGTTAGAAG
CCCTTTTGTTCCTTTTCACATGTTATCAAGTGGTTAAGGCAGGGCGGATT
CTGGATGAAATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGAGAGT
AGGAGCAAAGAGAAAATATGGTACACAAAATAAGTATACAGGCCTTTCCA
AGGGTCTTGAACCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGA
GAGATTAGAAGGAAGGAAAAGAAAAAAGAAAAGAAAAAAGATCGATTAGC
GGAGGTCTCTAGGAGATACTCGTCACTAGATGAGCTCAGGAAGCCAGCTC
TTAGTAGCTCTGAAGCAGATGAAGAATTCTCCTCTGAGGAAACAGACTGG
GGAGGAAGAAGCAGCTCATTATGAGAAAAAAGGGTACCAGCCCAGGTAAA
GTGCTAGCTAATCAGTTAAGGAAGCCAAAAGGGGTTGTCGAAAGGCAGTT
TGCTGAATGGTCTCAGGGCAGTCGGCTTTCAAGGCCCGCCCTATTGGGAG
CCCCGCCCCTGCGTAATGCGTCAGCAATGCGCAAAAAGGGCATGCGGAAA
AAAGCAATGGCCAAATAACATTGTCCCTAAAAGCN
NGTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACTCACCATTCCAAAGGCTATG
TTAGTGCCAGTTTCTCCTCAGAGGCTTCCAAATGTTGACTTGAAGAACAC
AGGAAGGTGCCCCAAGCATTGCCCATCTGGGGGGCATGTATTCTAGGACC
AGTCTGCCAGGGGATTGGTGAGATTGGAGACACAAGCTATGGGGGAGTTG
GGGGGGCAGGGAATTAATTAGTTTAAATGGATCATTGAGTTCACAGTGAG
AATCACAGGGGTGTTCAAACCAGGTGTTTTTGTTGTCCCAGTTCTGGGAG
TATGCCTGTGTGAATCGTTCACTCCCAATCAGAGCATACCAGGAAGTAGG
ACCTATGACTGATTTTTTCGGACGTGAACTCATGATATTTTGCTCTTTTT
TTGATGATTTTTTCCCACGGTCCTGCACTATCTTTCTTCCCTTTGGTGGT
TTTTTTTTAACATGTTATTGTCTACGCATTCTTAGCTCCTTTTCAATTTT
TTGTCCTGTCTTCTTCTCTTTTAATTCTCGTTCGCTCCTCTTTGTTTTTT
TTCTGTCTTTTCCCTCTTTTTTTTTCCCCTCTTTCCCTCCTCCTCTTTTC
TCTTTATTTTTCTTTTTCTTTTCCCCCCCCTTTTTTTCCCACCTCCTCCT
TCTTTTTCTCTCCCCCTTTTCCTCCCTCTCCTTTTTTTTCATCTCTTTTC
TCCTCCCCTTTCTCCTTCCTTCTTCGCTCTATTCTCTATTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_h23.g1 MSMg01no481_h23.g1 CHROMAT_FILE:
MSMg01no481_h23.g1 PHD_FILE: MSMg01no481_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:09 2005
         (248 letters)



>mm_chr8_119611303_119611950
          Length = 648

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactcaccattccaaaggctatgttagtgccagtttctcctcagaggcttccaaatgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cactcaccattccaaaggctatgttagtgccagtttctcctcagaggcttccaaatgttg 389

                                                                       
Query: 61  acttgaagaacacaggaaggtgccccaagcattgcccatctggggggcatgtattctagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acttgaagaacacaggaaggtgccccaagcattgcccatctggggggcatgtattctagg 329

                                                                       
Query: 121 accagtctgccaggggattggtgagattggagacacaagctatgggggagttgggggggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 accagtctgccaggggattggtgagattggagacacaagctatgggggagttgggggggc 269

                                                                       
Query: 181 agggaattaattagtttaaatggatcattgagttcacagtgagaatcacaggggtgttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agggaattaattagtttaaatggatcattgagttcacagtgagaatcacaggggtgttca 209

                   
Query: 241 aaccaggt 248
           ||||||||
Sbjct: 208 aaccaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)