BAC Information

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BAC

Clone NameMSMg01-481J05
Chromosome8 (Build37)
Map Location 37,550,686 - 37,551,296
singlet/doubletsinglet
Overlap genenone
Upstream geneThex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878
Downstream gene6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481J05.T7 (MSMg01no481_j05.b1)MSMg01-481J05.TJ (MSMg01no481_j05.g1)
ACCAG561949AG561950
length7681,082
length of high quality
(start - end)
611 (65 - 675)---
definitionCHROMAT_FILE: MSMg01no481_j05.b1 PHD_FILE: MSMg01no481_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:15 2005CHROMAT_FILE: MSMg01no481_j05.g1 PHD_FILE: MSMg01no481_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCCGCGGAATTCCT
GAACAAGTTTTCTCTCAGTGGCTGAATGACCCGCTTCTTTCCCTCTGTGG
GCATTTTTAGGTCATGGGATAAACAATACTAAGCACTTTTGGTAGTGAGT
TACCTTCTAGCTGTTCTCAAAAACACAATGGTTTTATTCTTGAGGTCGTT
TGCTCTTCTCTTTCCTCCTGGTTTCAGACTTGGGGCATGGGGGCAGATTG
CTCCCAGATGATGGGTCCTGAGAGCTCTTTGAAATAAAAATGCTTGAGTC
TGAAGTGGAGGGGCCCCTCTTCCAGCGTCAGCTTCTTGGTGAGCTCCAGG
TCACTTAAGAATAGGTAAATACAGTGCACGCTACAGAGACCAAGATTGGG
ATGGGATCAAGAGCAATAGTAAGCCAGGCAAAGCACATGCTACCCACTCA
GCCACTGTACCAGAAGGCGTATGTTGTGTCCTTTCATGTGTGCAGAATAT
AAAGAAAAGATCTGCCCAACACAGACAGCAGTGGCTGATGGAAATTGGAG
TCTGGTGGCCTCACTTATAGATAAGCAATGAAAAGTGGGGATTCATTACA
GAGTGGACTCTGTCTTTGATGTCAGGCTGCTCTTGGAGTCTCATTCTCCA
CCCCATAATTAATTTCTATGTTACAAAGAGCCTTTGCTGTGTGGGTCACT
TTTTTTGGGGTTTGGGGTTTGTTTTGGCTGGTTTGTTTTGTTTTTGGGGT
GGTTGGTTGNTTGGTTGA
GGAAGGGTGAGGGGTTGGCGGCCGGCTGGCCCACCCCCCGTTGGGCGCGC
TCTTTCGCGACATTCATAACACTCCTCATCAACATAATAGATGATCATAA
TAGTGGCGGTGAGCGCGCGCCTGCAGGTTTAGTTTCCATCCCTGCCGCTC
CCGAGACCCTGGATGAAGAGATTGTTGGTACGTGTCGGCGTTGCCACTGC
CTGGTTGCACTTGTTGTTAACCCTCGGGGCCTGTTCTATTATGACGCCCG
CTCGCTTATCTGTTCCTTTCGGATGCTGGTGCTTCTCTACCCCGTTCTCG
TCATACGATGAGTCTGTAGGAGGGTGTGCCGGCGGCGCGGCGCCGGCACG
GGCGCGTGTCTGTGATTGACTCAGGTCGTGTGCCGCCGGCGCCCTGTTGT
CTTTCGTGACGAGTTCCGCACGCCCCGCGCTGGTTCCCTTTGTCCTCCCA
TTTCGTGGCTTCTCGGTGTGGTCCGCTTCGGTCTGGAGCGCCCACTATTC
GGCGGCATCCCACTCAGCGCGTAAGTGTGGGGTACATATTGCGTGATTCC
TAAGCTAGTGGACAACTCTTACCGCTACATTAACCACGCATCCTTTCCGC
CTCCTCCGCGTCATACACCAGCTGACCACGAGAACTCCCCAGATCGTGAT
AGCGGCGCGTGCGCTCTATTCGTATCGCCCCATCATTCGTGTTCGATACA
TGCAGTCGATTCGCGGCCCGATGACGCGGTTGGCGGTTCGCACGCGCGAC
CCATGCTACGCTCGTTGTTCGGAGTGGCCGCGCGAGAATGCGGATGTGGC
GACTGACATATGCCTACGGCGCCCGGCGCGGTTATTTGTTGTTATGACGC
CCCTTTCATTGTACTGCTGCCACGACGTCAAGCCGCGATATATATATCCG
CGCGTAGTACTGCCTGACACCGCCGCCACTTCTTTGCTCACGCCTGCACC
CACTCTTCTTTGATTCCCACTCACGCACTCTATCCAGCCCCTCCTCCCAT
CTATCTTTCCCCGCTCCTCCTACTCCCTACCTCCTTATACGCCTCTCCTA
TGCCAAGCCATATCACCGCGATGCGTGGGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_j05.b1 MSMg01no481_j05.b1 CHROMAT_FILE:
MSMg01no481_j05.b1 PHD_FILE: MSMg01no481_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:15 2005
         (611 letters)



>mm_chr8_37550486_37551496
          Length = 1011

 Score = 1181 bits (611), Expect = 0.0
 Identities = 611/611 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtggctgaatgacccgcttctttccctctgtgggcatttttaggtcatgggataaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtggctgaatgacccgcttctttccctctgtgggcatttttaggtcatgggataaac 260

                                                                       
Query: 61  aatactaagcacttttggtagtgagttaccttctagctgttctcaaaaacacaatggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatactaagcacttttggtagtgagttaccttctagctgttctcaaaaacacaatggttt 320

                                                                       
Query: 121 tattcttgaggtcgtttgctcttctctttcctcctggtttcagacttggggcatgggggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattcttgaggtcgtttgctcttctctttcctcctggtttcagacttggggcatgggggc 380

                                                                       
Query: 181 agattgctcccagatgatgggtcctgagagctctttgaaataaaaatgcttgagtctgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agattgctcccagatgatgggtcctgagagctctttgaaataaaaatgcttgagtctgaa 440

                                                                       
Query: 241 gtggaggggcccctcttccagcgtcagcttcttggtgagctccaggtcacttaagaatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggaggggcccctcttccagcgtcagcttcttggtgagctccaggtcacttaagaatag 500

                                                                       
Query: 301 gtaaatacagtgcacgctacagagaccaagattgggatgggatcaagagcaatagtaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtaaatacagtgcacgctacagagaccaagattgggatgggatcaagagcaatagtaagc 560

                                                                       
Query: 361 caggcaaagcacatgctacccactcagccactgtaccagaaggcgtatgttgtgtccttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggcaaagcacatgctacccactcagccactgtaccagaaggcgtatgttgtgtccttt 620

                                                                       
Query: 421 catgtgtgcagaatataaagaaaagatctgcccaacacagacagcagtggctgatggaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catgtgtgcagaatataaagaaaagatctgcccaacacagacagcagtggctgatggaaa 680

                                                                       
Query: 481 ttggagtctggtggcctcacttatagataagcaatgaaaagtggggattcattacagagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttggagtctggtggcctcacttatagataagcaatgaaaagtggggattcattacagagt 740

                                                                       
Query: 541 ggactctgtctttgatgtcaggctgctcttggagtctcattctccaccccataattaatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggactctgtctttgatgtcaggctgctcttggagtctcattctccaccccataattaatt 800

                      
Query: 601 tctatgttaca 611
           |||||||||||
Sbjct: 801 tctatgttaca 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)