BAC Information

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BAC

Clone NameMSMg01-481M14
Chromosome8 (Build37)
Map Location 17,470,653 - 17,662,718
singlet/doubletdoublet
Overlap geneCsmd1
Upstream genenone
Downstream geneLOC665638, LOC100040466, Mcph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481M14.T7 (MSMg01no481_m14.b1)MSMg01-481M14.TJ (MSMg01no481_m14.g1)
ACCAG562110AG562111
length733759
length of high quality
(start - end)		560 (65 - 624)614 (68 - 681)
definitionCHROMAT_FILE: MSMg01no481_m14.b1 PHD_FILE: MSMg01no481_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:32 2005CHROMAT_FILE: MSMg01no481_m14.g1 PHD_FILE: MSMg01no481_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,470,653 - 17,470,944)(17,662,105 - 17,662,718)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXAAATCGAAGAATGGGCGGAATCA
ATGGTCTTTCACCTACTGTGAATGTTAGAGAAATCCTTTAAACATCTTTG
CACAATGAATGGCATGAGTGACTATATACAGCAAGTGCATTGGCTGATTT
TCAAATGTTGTGCAATATCTCACGTTTCTAAACCATGATACTCAGTCCCA
ACCTAAGTAGAAAAGAGCACACTTTCTTGACAGTTTGGGTTGTTTAATAT
CTGAGCTTTGGATCATGAAGAAAAGCCCCAAGATGGCTTCCTCAGAGAAT
GAAAACACATGATCTCTTACAGTTTGAGAGGTGTAATTCAGTGTGACTTG
ATTTTTTTTCCATTTTTTATTAGGTATTTCGCTCATTTACATTTGCAATG
CTATACCAAAAGTCCCCCATAGCCACCCACCCCCTCTCCCCTACCCACCC
ACTCCCCTTTTATGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTT
TGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT
TTGATGCATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCA
TAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTTCTTTGGTAC
TTTCTCTAGCTCCTTCATTGGGGGCCATGTGATCCATCCAATAGCCGACT
GTGAGCATCCACTTCTATGTTTGCTAGGCCCAG

AGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGCATCCAGTCGACAAATTGTTAAACAATGAGA
AATAATCTATTAAGAAAAACTTCTAATTTCTTGGAAAGAAACCTAGAAAT
TGTTTTAGGAGAATGGATAATGTACAAGCAAGAATGTTAGATCTAAAGAA
GGAAGGGAAGAGCCTCAGGCAAGGATAACAAAGGGAAATTAAATGTCTTG
TCACTCTGTCCTTGTGGTAAGTGCACATAACCAAGGCTTGCCTTCTTATG
CATCTTTGAGGACACATTTCATCAGTGAGAATAATGTCCCTGTCATCTTT
CTCCAGGAAGCTGAAAAGCTGAAACCAATTTCCCATTCAAAAGTAACTCT
CCCACAGCCACCACACCATGCAGCTTGCTTAGATGATATAGAGCTTCTAG
GTGGAGTTAAATTAGTTGAAAATACAGAGTATAAGTATTCAGGCATGCAA
ATAGATTTATTTGAAAGAGATGTTATTGGCATGTTAATGCATAATAGAAA
ACAAGCACATAACTATTTTGACAAATATCACAGATGGTGTAAAAGTATTA
GAAAGGAGAAACAAAGGCCAGATATAGCATATGTGTCAGGGTGAGTTGGT
CCCCATGGGTAGGCTCCCTTTCTCTGAGGAGAAGGGGAATGGGGTGGGGG
AGTGTAGAATGAGNTGGNNNNNTTTTTGGNGTTTGGGTTTTTTGGTTTTT
TTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_m14.b1 MSMg01no481_m14.b1 CHROMAT_FILE:
MSMg01no481_m14.b1 PHD_FILE: MSMg01no481_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:32 2005
         (560 letters)



>mm_chr8_17470453_17471412
          Length = 960

 Score =  549 bits (284), Expect = e-160
 Identities = 290/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtgaatgttagagaaatcctttaaacatctttgcacaatgaatggcatgagtgacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtgaatgttagagaaatcctttaaacatctttgcacaatgaatggcatgagtgacta 260

                                                                       
Query: 61  tatacagcaagtgcattggctgattttcaaatgttgtgcaatatctcacgtttctaaacc 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatacagcaagtgcattggctggttttcaaatgttgtgcaatatctcacgtttctaaacc 320

                                                                       
Query: 121 atgatactcagtcccaacctaagtagaaaagagcacactttcttgacagtttgggttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgatactcagtcccaacctaagtagaaaagagcacactttcttgacagtttgggttgtt 380

                                                                       
Query: 181 taatatctgagctttggatcatgaagaaaagccccaagatggcttcctcagagaatgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatatctgagctttggatcatgaagaaaagccccaagatggcttcctcagagaatgaaa 440

                                                               
Query: 241 acacatgatctcttacagtttgagaggtgtaattcagtgtgacttgattttt 292
           |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacatgatcacttacagtttgagaggtgtaattcagtgtgacttgattttt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no481_m14.g1 MSMg01no481_m14.g1 CHROMAT_FILE:
MSMg01no481_m14.g1 PHD_FILE: MSMg01no481_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:32 2005
         (614 letters)



>mm_chr8_17661957_17662970
          Length = 1014

 Score = 1172 bits (606), Expect = 0.0
 Identities = 612/614 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcatccagtcgacaaattgttaaacaatgagaaataatctattaagaaaaacttctaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tgcatccagtcgacaaattgttaaacaatgagaaataatctattaagaaaaacttctaat 703

                                                                       
Query: 61  ttcttggaaagaaacctagaaattgttttaggagaatggataatgtacaagcaagaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ttcttggaaagaaacctagaaattgttttaggagaatggataatgtacaagcaagaatgt 643

                                                                       
Query: 121 tagatctaaagaaggaagggaagagcctcaggcaaggataacaaagggaaattaaatgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tagatctaaagaaggaagggaagagcctcaggcaaggataacaaagggaaattaaatgtc 583

                                                                       
Query: 181 ttgtcactctgtccttgtggtaagtgcacataaccaaggcttgccttcttatgcatcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ttgtcactctgtccttgtggtaagtgcacataaccaaggcttgccttcttatgcatcttt 523

                                                                       
Query: 241 gaggacacatttcatcagtgagaataatgtccctgtcatctttctccaggaagctgaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaggacacatttcatcagtgagaataatgtccctgtcatctttctccaggaagctgaaaa 463

                                                                       
Query: 301 gctgaaaccaatttcccattcaaaagtaactctcccacagccaccacaccatgcagcttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gctgaaaccaatttcccattcaaaagtaactctcccacagccaccacaccatgcagcttg 403

                                                                       
Query: 361 cttagatgatatagagcttctaggtggagttaaattagttgaaaatacagagtataagta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cttagatgatatagagcttctaggtggagttaaattagttgaaaatacagagtataagta 343

                                                                       
Query: 421 ttcaggcatgcaaatagatttatttgaaagagatgttattggcatgttaatgcataatag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttcaggcatgcaaatagatttatttgaaagagatgttattggcatgttaatgcataatag 283

                                                                       
Query: 481 aaaacaagcacataactattttgacaaatatcacagatggtgtaaaagtattagaaagga 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 282 aaaacaagcacataactattttgacaaatatcacagatggtgtaaaagtattagaaagaa 223

                                                                       
Query: 541 gaaacaaaggccagatatagcatatgtgtcagggtgagttggtccccatgggtaggctcc 600
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 222 gaaacaaaggccagatatagcaaatgtgtcagggtgagttggtccccatgggtaggctcc 163

                         
Query: 601 ctttctctgaggag 614
           ||||||||||||||
Sbjct: 162 ctttctctgaggag 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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