BAC Information

Click to search

BAC

Clone NameMSMg01-482A16
Chromosome8 (Build37)
Map Location 121,561,038 - 121,561,596
singlet/doubletsinglet
Overlap geneCdh13
Upstream genenone
Downstream geneHsbp1, Mlycd, Osgin1, Efcbp2, Gm587, Mbtps1, Hsdl1, Lrrc50, Taf1c, EG628061, 4930403J07Rik, Kcng4, Wfdc1, Atp2c2, 4632415K11Rik, Cotl1, BC025816, Usp10, Crispld2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482A16.T7 (MSMg01no482_a16.b1)MSMg01-482A16.TJ (MSMg01no482_a16.g1)
ACCAG562306AG562307
length706757
length of high quality
(start - end)
243 (47 - 289)560 (79 - 638)
definitionCHROMAT_FILE: MSMg01no482_a16.b1 PHD_FILE: MSMg01no482_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:52 2005CHROMAT_FILE: MSMg01no482_a16.g1 PHD_FILE: MSMg01no482_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAAATACGAAACAGGATCCGCGGAATTCCCAATACCCTAAATTCTGGT
TCTCTCCTGTACCAGTGCTTCTATGCAAGATTTAAAACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACATTA
ACATGCCACAGAGGGTGTGTGGACATTGCAGGACAACTTTCTGGAGTCCA
TTCTCTCCTTCTACCATGAAAGACCGCATGTGGAACTCAGGCCATCAGTT
TTGGTGGCAGGTACCTTTACCCACTGACCCATCTTGCTGTTTTCTGTAAC
CTAGTTTATATACATGCATATTGAGGGTTATACGAACAGTTTTTTGGGTG
CAAAGCAGTTATGAGCGGAACAACCTAAAGGAGCCGTGGTCTATGGGATT
TTACCGCTGCCATCCTGCAGACACAAACTGCCAGGACTGGACAAAACTAG
GTTTTGGCTTTGTTTTGTTTTGCTTTTTGCCTTTTTTGGTTAGAGAAATC
TCAAATAACAGTTTTCCCCCCTTTACCAAACAAGATGAACACAGCCTCCC
GAAGAACTAACTGGAAAACCTAAGCATGTTGGGCAGGTGATTTCCAGGTC
ATTTTCCACAGGAGCCCAATGACGCCTTGAAAACGTACCACCAAGACATC
CCCACCGGGCACAGCTCAGAATTTTTCTTCTTTCAACACAACCAATCCGT
GGCGAG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCACTTGACTCCCCCCCTCCC
CCCACACACACACCCCAGCCTCTGAGTCCCAGGGTCACCTTCAGACATGG
CATTGCCTGGTCAGTGAGGATGGAAAAGTCAAGGCCACCACCACAGCAGA
AGTAGGGCCACCACCACCTAAAACTTAAAACAAAGCAAAGGCCCTCTCAC
TCTCCCCCATGCTGTCTTTTTGGTCTTTGAGCAGCATTTATTTCTGTGTA
GCATTAATGATAATTATACCCCCACACACACTGTGGTGGGGCACTCAGAG
TTCTTTGTGTCTTGCTCATTGCTAAACACCCCCGCCCTCCGCCACATCTA
ACAGATGACCAAGTAGACATCAGACCAAACCCACGCGTCAGTCAGCGCTA
GAGCTCGGAGTGAGGTCTGTCTAGGGTGTGCTTGTTTTGACTGCCATTTA
GCTAGCTGTTCATGGTGAATTACCTGGAGACGGAACAGAAGCAAGAGAGA
GGCAGATTCACAAGCGCTGGGATGATTAGAGATTGTGAACACCCAGCTGT
CAATCTCATTACTGACGTTAGTATTTTCAGTCCCATTTAGAACACAGGGG
GCAAAGTCTGAAAGGGGGAGACATTTCTGAGACTGTTGAACAGGCACATC
AGTGACTCACCGGCTGTTGCCTTGAGCTGTCTTGATCCGGCCTCTTTTAA
CCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_a16.g1 MSMg01no482_a16.g1 CHROMAT_FILE:
MSMg01no482_a16.g1 PHD_FILE: MSMg01no482_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:52 2005
         (560 letters)



>mm_chr8_121560838_121561796
          Length = 959

 Score =  986 bits (510), Expect = 0.0
 Identities = 549/562 (97%), Gaps = 5/562 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcacttgactcc-ccccctccccccacacacacaccccagcctctgagtcccagggtca 59
           ||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 agcacttgactccaccccc-ccccacacacacacaccccagcctctgagtcccagggtca 259

                                                                       
Query: 60  ccttcagacatggcattgcctggtcagtgaggatggaaaagtcaaggccaccaccacagc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccttcagacatggcattgcctggtcagtgaggatggaaaagtcaaggccaccaccacagc 319

                                                                       
Query: 120 agaagtagggccaccaccacctaaaacttaaaacaaagcaaaggccctctcactctcccc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaagtagggccaccaccacctaaaacttaaaacaaagcaaaggccctctcactctcccc 379

                                                                       
Query: 180 catgctgtctttttggtctttgagcagcatttatttctgtgtagcattaatgataattat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 catgctgtctttttggtctttgagcagcatttatttctgtgtagcattaatgataattat 439

                                                                       
Query: 240 acccccacacacactgtggtggggcactcagagttctttgtgtcttgctcattgctaaac 299
           |||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 440 accccc-c-cacactatggtggggcactcagagttctttgtgtcttgctcattgctaaat 497

                                                                       
Query: 300 a-cccccgccctccgccacatctaacagatgaccaagtagacatcagaccaaacccacgc 358
           | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 498 accccccgccctccgccacatctagcagatgaccaagtagacatcagaccaaacccactc 557

                                                                       
Query: 359 gtcagtcagcgctagagctcggagtgaggtctgtctagggtgtgcttgttttgactgcca 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtcagtcagcgctagagctcggagtgaggtctgtctagggtgtgcttgttttgactgcca 617

                                                                       
Query: 419 tttagctagctgttcatggtgaattacctggagacggaacagaagcaagagagaggcaga 478
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 618 tttagctagctgttcatggtgaattacctggagactgaacagaagcaagagagaggcgga 677

                                                                       
Query: 479 ttcacaagcgctgggatgattagagattgtgaacacccagctgtcaatctcattactgac 538
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttcacaagcgccgggatgattagagattgtgaacacccagctgtcaatctcattactgac 737

                                 
Query: 539 gttagtattttcagtcccattt 560
           ||||||||||||||||||||||
Sbjct: 738 gttagtattttcagtcccattt 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 959
Length adjustment: 10
Effective length of query: 550
Effective length of database: 949
Effective search space:   521950
Effective search space used:   521950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)