BAC Information

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BAC

Clone NameMSMg01-482C24
Chromosome8 (Build37)
Map Location 5,381,249 - 5,381,643
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
Downstream geneLOC623409, LOC669429, LOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482C24.T7 (MSMg01no482_c24.b1)MSMg01-482C24.TJ (MSMg01no482_c24.g1)
ACCAG562416AG562417
length725957
length of high quality
(start - end)
684 (37 - 720)---
definitionCHROMAT_FILE: MSMg01no482_c24.b1 PHD_FILE: MSMg01no482_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:02 2005CHROMAT_FILE: MSMg01no482_c24.g1 PHD_FILE: MSMg01no482_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAT
CCTTTACACCCTAGTTCTTAACTATAACTCAACAGAATATTTGTCTTAGT
CAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGA
GGAAAGGGTTTATTCGGCTTACACTTCCATACTGTTGTTCATCACCAGAG
GAAGTCAGGACTGGAACTCAAACAGGTCAGAAAGCAGGGGCTGATGCAGA
GGCCATGGAGGGATGTTCCTTACTGGCTTGCCTCCCCTGGCTTGCTCAGC
CTGCTCTCTTATATAACCAAGACTACCAGCCCAGAGATGGTTCCACCCAC
AAGGGGCCTTTCCTCCTTGATCACTAATTGAGAAAATGCCTTACAGCTGT
ATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGGTAACTC
CAGCTGTGTCAAGTTGACACAAAACTAGCCAGTATAATGTTCATTTATTT
AGACATATAACAGGTATCTCCAAGTTATTATAACCAAATTATTATTTTTC
TGTTATTGATATTTCCATCAGTCATCATAACCACTCATTTACTCAAACAT
AAATTCTCCAGTCTACCATTGAATAATGACTTTAATTTATTTTGAAAAAT
TCCATGTTGAATATGTACTCCCTCACTTCCTTAAATCTTTACATCAGGGT
CCATTATGTCCCTATCTCACCAGTA
TCAATGATTCTTACCCGTCACCCGCAATGTCATATGGGCCCCGTTCTGAC
TCATCCGGGCCGGTGTTTTTGCGTTACCGACTAATGCGCGGGGGAAGATC
GCCCTTGTGTCTTCGCCGTGATTTAATAATTCTGCCGCTGTATTCTTGCG
GCATCTCAAGTTGTTAAAAGCGCTAAAACGCATGGCCTTTGACGCCCCCC
GCGTGTGCTCCTCGATTTGAATGTGTATTGGTAGACGTGATGTTGGCCGT
GTTGATGTATCGTAACAAATTTTCCCCCTCGCCCTCCTTTTTTTCCGCTC
AGTTCCCACCCATTGTTGCGTATACCGGCCGACGACTCGCCTCACTGACG
CCCTCTCTCCCGTTCTGGGCCTCGCCGTCCTACGGGCCGGTATGGGTATA
TGTCAGCGGCAGACCTACGCTCCGCGAATATAATTTTGTAGTTAATGCTG
TCCGTAACTGGTGTGCACGGGTGTTTATCCACATCGGCCTCGACTTTCTA
TTCGTTACACCCTTCCTTTACCGCTCATGCCCATCATTTGTATTGCGTAT
CTTCCCCCCCAGGTGATTTTCGTGTCCCCTCGTTCGTTTTCCCAACGCGT
CTCTTGCCCCGGTTTCTTTTTACTGTCCTGCGGAGGACGTTATCTCACCC
GTGCTTATATCACCAGGCCTTGCGCCTTCTTTGTCCGCCGCTTAATGAGA
CGAGACATGTGATCGTTTGTAGTATTCTGATATCATTCCGCCGTATTTAC
GACGCGCCAGCATGTTTGCACCTCGCTCCTTTATGTAGCGCCCGCACTCC
TTGCCTGTGTTTTGTCTTAGCCTTATATTGTACGCTATCAGCTACACTCT
TTATGCGCCCGCTTTTTCCGCGCCCACGTAGCTTATGCCGACGACACTTT
TCATCTGTCGCGTCGCTCCGTGCGCGAGGTACCTGTCGTCAACGCTCGTA
TACGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_c24.b1 MSMg01no482_c24.b1 CHROMAT_FILE:
MSMg01no482_c24.b1 PHD_FILE: MSMg01no482_c24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:02 2005
         (684 letters)



>mm_chr8_5380599_5381682
          Length = 1084

 Score =  688 bits (356), Expect = 0.0
 Identities = 387/398 (97%), Gaps = 3/398 (0%)
 Strand = Plus / Minus

                                                                        
Query: 287  ctaccagcccagagatggttccacccacaaggggcctttcctccttgatcactaattgag 346
            ||||||  ||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1045 ctacca--ccagagatggtcccacccacaaggggcctttcc-ccttgatcactaattgag 989

                                                                        
Query: 347  aaaatgccttacagctgtatctcatggaggcatttcctcaactgaagctcctttctctgt 406
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988  aaaatgccttacagctggatctcatggaggcatttcctcaactgaagctcctttctctgt 929

                                                                        
Query: 407  ggtaactccagctgtgtcaagttgacacaaaactagccagtataatgttcatttatttag 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928  ggtaactccagctgtgtcaagttgacacaaaactagccagtataatgttcatttatttag 869

                                                                        
Query: 467  acatataacaggtatctccaagttattataaccaaattattatttttctgttattgatat 526
            |||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 868  acatataacaggcatctcaaagttattataaccaaattattgtttttctgttattgatat 809

                                                                        
Query: 527  ttccatcagtcatcataaccactcatttactcaaacataaattctccagtctaccattga 586
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 808  ttccatcagtcatcataaccattcatttactcaaacataaattctccagtctacgattga 749

                                                                        
Query: 587  ataatgactttaatttattttgaaaaattccatgttgaatatgtactccctcacttcctt 646
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 748  ataatgactttaatttattttgaaaaattccatgttgaatatgtactccttcacttcctt 689

                                                  
Query: 647  aaatctttacatcagggtccattatgtccctatctcac 684
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 688  aaatctttacatcagggtccattatgtccctatctcac 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)