BAC Information

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BAC

Clone NameMSMg01-482D16
Chromosome8 (Build37)
Map Location 103,506,594 - 103,660,326
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042069, LOC436054, LOC100042078, LOC100042086, LOC100042092, LOC384895
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482D16.T7 (MSMg01no482_d16.b1)MSMg01-482D16.TJ (MSMg01no482_d16.g1)
ACCAG562444AG562445
length709761
length of high quality
(start - end)		674 (36 - 709)661 (77 - 737)
definitionCHROMAT_FILE: MSMg01no482_d16.b1 PHD_FILE: MSMg01no482_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:05 2005CHROMAT_FILE: MSMg01no482_d16.g1 PHD_FILE: MSMg01no482_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,659,656 - 103,660,326)(103,506,594 - 103,507,254)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACAA
ATACATTCTAAACTGGAAGCCATGATATGTAGGCAAAGAAAACAGAGAAG
AAAAATATTTGAGGAAAATATTTAAATATTTTTGTAAATGTTTTTATTTT
TATAAATATATAAATTTTATAATTTAAAAATTATGTTTTATAAATTTCTT
TAAATAATAAAATATTTCTAAGAAATAAAAATATTTAAAGAAACTAAAAA
TAAAATAAAAATAATAAGATGAAATTAAAAAATAAAAATATAATAAAAAA
TTGAAAAAATAAAACTTTCTGTCAAAATATAATAAGACAAGTAACATATA
AGGTAAGTTTGAGTTCATTCTTTATCGCCCATTATCTCATGGCCTACAGC
CTCTCCTCGAAAAGTACTTTGTTTCTGTCACAAGGCTAGCTTGTTTGAAA
CTTGATTTTTATTTGCAAGTGATGGTCAATTGGAGATTATTTATGTGTTA
GTAACATGGGCATGTGCCAATTTCTTCTTTCAAATCTATGGTGTTGGTCA
AACTGGATCATTGCATATAGAAGAACCCAAATAAAGCTACATTCATCTCC
CTGCACAAAACTTAACACAAAATTAATCACATAGCTTAGCATAATACCAT
ATGCACTAAATTTAATAGAAGAGCAAGTGGGGAATAGTAAAGAATTTCTG
AATAAAGCA

CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTACATAGAGAAAATGCAAGGTT
AAACATAGGTAGTGTGAAATGATGAGGCACATATATAAGACTCATGAGCT
TACATACTTAAATAGAATTAATTGTCAATTTATTATAATTATTGGATCTA
TGATAGAGGGTAGAGAAGAGAACACTGAGTAATAAATGAGCATGGAAAAT
AAAATGTTTAAAGCAGCACCAGGTACATAGCCAATTTGTACCAAGATGAG
TTGTAGGTGAACCTGTGTATAGAAACACAAAATACAAATACAACATACTA
AAGTGCATTTGATCTATTAATTAAGATAGTAGGCCCAGTAATTCTAAGAA
CTTTGTATTTTATTGAAAACAAAAGTAAATTATCAACGTTCAATGGTGGC
GTTAGTGTTGGTGTTCAGATGTGTTTTTATTTGTTCCTTAGAAAGTTTAA
AATATAAAAGGAAACTATGAACTTTTAGTTTCCTGTAGTCAGTGAACAAG
AAAAATTGACTCCAGGGAAAATGAAATTTTCTCAAGAAAAGGGTCAAACT
TTGTTAAATACATCCCCTTTTCTTAAGTTCATTTCTGAAGATGTTGTTCA
GAACCAGAACATACATGACAATATGTATTTAGGTGTTTTCACCCTGGAGA
CAGATTTTAAATATCCCCTTTAACATATATTGCCCTAGCCGGGCATGGTG
GCTCACGCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_d16.b1 MSMg01no482_d16.b1 CHROMAT_FILE:
MSMg01no482_d16.b1 PHD_FILE: MSMg01no482_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:05 2005
         (674 letters)



>mm_chr8_103659349_103660422
          Length = 1074

 Score = 1243 bits (643), Expect = 0.0
 Identities = 664/671 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccacaaatacattctaaactggaagccatgatatgtaggcaaagaaaacagaga 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 ggaattccacaaaaacattctaaactggaagccatgatatgtaggcaaagaaaacagaga 919

                                                                       
Query: 64  agaaaaatatttgaggaaaatatttaaatatttttgtaaatgtttttatttttataaata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 agaaaaatatttgaggaaaatatttaaatatttttgtaaatgtttttatttttataaata 859

                                                                       
Query: 124 tataaattttataatttaaaaattatgttttataaatttctttaaataataaaatatttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 tataaattttataatttaaaaattatgttttataaatttctttaaataataaaatatttc 799

                                                                       
Query: 184 taagaaataaaaatatttaaagaaactaaaaataaaataaaaataataagatgaaattaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 taagaaataaaaatatttaaagaaactaaaaataaaataaaaataataagatgaaattaa 739

                                                                       
Query: 244 aaaataaaaatataataaaaaattgaaaaaataaaactttctgtcaaaatataataagac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aaaataaaaatataataaaaaattgaaaaaataaaactttctgtcaaaatataataagac 679

                                                                       
Query: 304 aagtaacatataaggtaagtttgagttcattctttatcgcccattatctcatggcctaca 363
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aagtaacatataaggtgagtttgagttcattctttatcgcccattatctcatggcctaca 619

                                                                       
Query: 364 gcctctcctcgaaaagtactttgtttctgtcacaaggctagcttgtttgaaacttgattt 423
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 618 gcctctcctcgaaaagtactttgtttctgtcacaaggctagcttgtttgaaacttgatct 559

                                                                       
Query: 424 ttatttgcaagtgatggtcaattggagattatttatgtgttagtaacatgggcatgtgcc 483
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 558 ttatttgcaagtgatggtcaattggagattatttatgtattagtaacatgggcatgtgcc 499

                                                                       
Query: 484 aatttcttctttcaaatctatggtgttggtcaaactggatcattgcatatagaagaaccc 543
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gatttcttctttcaaatctatggtgttggtcaaactggatcattgcatatagaagaaccc 439

                                                                       
Query: 544 aaataaagctacattcatctccctgcacaaaacttaacacaaaattaatcacatagctta 603
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 438 aaataaagctacattcatctccctgcacaaaacttaacacaaaattaatcacatagctca 379

                                                                       
Query: 604 gcataataccatatgcactaaatttaatagaagagcaagtggggaatagtaaagaatttc 663
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gcataataccatatacactaaatttaatagaagagcaagtggggaatagtaaagaatttc 319

                      
Query: 664 tgaataaagca 674
           |||||||||||
Sbjct: 318 tgaataaagca 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no482_d16.g1 MSMg01no482_d16.g1 CHROMAT_FILE:
MSMg01no482_d16.g1 PHD_FILE: MSMg01no482_d16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:06 2005
         (661 letters)



>mm_chr8_103506394_103507454
          Length = 1061

 Score = 1208 bits (625), Expect = 0.0
 Identities = 652/661 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttacatagagaaaatgcaaggttaaacataggtagtgtgaaatgatgaggcacatatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 cttacatagagaaaatgcaaggttaaacataggtagtgtgaaatgatgaggcacacatat 260

                                                                       
Query: 61  aagactcatgagcttacatacttaaatagaattaattgtcaatttattataattattgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 aagactcatgagcttacatacttaaatagaattaattgtcaatttatcataattattgga 320

                                                                       
Query: 121 tctatgatagagggtagagaagagaacactgagtaataaatgagcatggaaaataaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctatgatagagggtagagaagagaacactgagtaataaatgagcatggaaaataaaatg 380

                                                                       
Query: 181 tttaaagcagcaccaggtacatagccaatttgtaccaagatgagttgtaggtgaacctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaaagcagcaccaggtacatagccaatttgtaccaagatgagttgtaggtgaacctgt 440

                                                                       
Query: 241 gtatagaaacacaaaatacaaatacaacatactaaagtgcatttgatctattaattaaga 300
           |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 441 gtatagaaacacaaaatacaaacacaacatactaaagtacatttgatctattaattaaga 500

                                                                       
Query: 301 tagtaggcccagtaattctaagaactttgtattttattgaaaacaaaagtaaattatcaa 360
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 501 tagtaggcccagtaattctaagaactttgtattttatagaaaagaaaagtaaattatcaa 560

                                                                       
Query: 361 cgttcaatggtggcgttagtgttggtgttcagatgtgtttttatttgttccttagaaagt 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgttcaatggtggcattagtgttggtgttcagatgtgtttttatttgttccttagaaagt 620

                                                                       
Query: 421 ttaaaatataaaaggaaactatgaacttttagtttcctgtagtcagtgaacaagaaaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaaaatataaaaggaaactatgaacttttagtttcctgtagtcagtgaacaagaaaaat 680

                                                                       
Query: 481 tgactccagggaaaatgaaattttctcaagaaaagggtcaaactttgttaaatacatccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgactccagggaaaatgaaattttctcaagaaaagggtcaaactttgttaaatacatccc 740

                                                                       
Query: 541 cttttcttaagttcatttctgaagatgttgttcagaaccagaacatacatgacaatatgt 600
           |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 741 cttttcttaaattcatttctgaagatgttgttcggaaccagaacatacatgacaatatgt 800

                                                                       
Query: 601 atttaggtgttttcaccctggagacagattttaaatatcccctttaacatatattgccct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atttaggtgttttcaccctggagacagattttaaatatcccctttaacatatattgccct 860

            
Query: 661 a 661
           |
Sbjct: 861 a 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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