BAC Information

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BAC

Clone NameMSMg01-483L17
Chromosome8 (Build37)
Map Location 36,400,727 - 36,401,388
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804
Downstream genePpp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483L17.T7 (MSMg01no483_l17.b1)MSMg01-483L17.TJ (MSMg01no483_l17.g1)
ACCAG563591AG563592
length760759
length of high quality
(start - end)
619 (72 - 690)662 (76 - 737)
definitionCHROMAT_FILE: MSMg01no483_l17.b1 PHD_FILE: MSMg01no483_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:03 2005CHROMAT_FILE: MSMg01no483_l17.g1 PHD_FILE: MSMg01no483_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAAGGAGCCGCG
GAATTCTCAACATTCCATCTCAAATGTCTGAGAAGCACATAAAGAAATGT
TCACCATCCTTAGTTATCAGGGAAATGCAAATCAAAATGTCTCAAAACCC
AGCCACAAAATTTGTCCTGCCTACAAGAAGTGCAGGGACAAAGATGTTGC
AGAGACCGAAGGAATGGTCAACCAATCACTAGCCCAACTTGAGATCTACC
CCATGGGCAAAAATCAATCTCTAATGCTATTAATGAGCTTATCATAGCTG
TCCTCTGAGAGGCCCAATGTATTTTCTGACTGAAACTGATGCAGGAACCC
ACAGCCAAACATTAGATGGAGCTTGGGAAGTTTTGTGGAAGAGTTGGGGG
AAGGACTGAGGCACCCACACGGGATAAGAACTCCAGAAGATCAAGAGAGT
CAACTAACCTGGACTCTTGGGGGCTCCCAGAGACTGAATTACCAATCAAA
GAGCATCCAAGGCATAGACCTAGCGCCCCACCCCACCACCCACACACACA
CCAGTAGCAGATATGTAGCTTTGTCTTCGTGGTGTCTCCTGACTCTGTTG
CCTGCCTGTACATCCTACTCCCCTAACTGGGCTGTCTTGTCTGGCCTCAG
TGGTAGAGGATGTATCTAGTCCTGCAGTGACTTGAGGTATCAGGGGGGTT
GGTATTCAGGGGAGACCTCCCTCTTCTCAGAGATGAAGGATACAGGAGTA
CGGGGGTTAG
NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTATTAAAACGCGCCCTGGCTCT
CACTGGAGATTTTTTGCTGTTTTGTTTGGTTGTGTTAAGTTCTTAAGCTG
ATTTCTGATATCACTCCCGTGGTGTTTCGAAGCTTTTCGTGCTTAAACTG
CACATTCTTCTGCAAGCAGAGATTTTTCGAGAAGAAGTAGGCAGTGTTTT
ATAGAATTTCAAAGAGATGGGAGGCTAAATGATGAGCGAATGTATGTACT
GGGTAGCTGAGGAGAGCAAGTGGACCAGGGAGGGGCTGTTGTTGCTGTTT
TCACGTGCACACGCGCTATAGTAGACTGTGACTTTCTCCTTATTTCTCTT
GACTTAGGACTTGGGGTATTGAATCACATACCAGATACACAGTCTCTGCT
ATTCTTTATTGTCCGAGGGTATCATTTGTAGTGCCTCCCCCCAAAGTCCA
AGTGGTAAAAGCTTGGCTCCCACAGGAAGTAGCGGAACCTATAGGAAGTG
GGTGTTAGGTTTTTAGGTCATTGGCAGAACTGCCTTTGAAGGAAATGGCA
GGTCTCAGTTTAGTTCTCTTCTAGGGTCTTCCAGACACACAGAAGTAGCT
TCCCTCACTACCATAGGACTTGTTAGACTCCAAACAGTCAGAGAAACAGG
AAGCTGACTCAGGGCATCTGCTATCACATCATGTCCCAAGGTATTTCAGT
CGCTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_l17.g1 MSMg01no483_l17.g1 CHROMAT_FILE:
MSMg01no483_l17.g1 PHD_FILE: MSMg01no483_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:03 2005
         (662 letters)



>mm_chr8_36400527_36401588
          Length = 1062

 Score = 1280 bits (662), Expect = 0.0
 Identities = 662/662 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttattaaaacgcgccctggctctcactggagattttttgctgttttgtttggttgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 tcttattaaaacgcgccctggctctcactggagattttttgctgttttgtttggttgtgt 803

                                                                       
Query: 61  taagttcttaagctgatttctgatatcactcccgtggtgtttcgaagcttttcgtgctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 taagttcttaagctgatttctgatatcactcccgtggtgtttcgaagcttttcgtgctta 743

                                                                       
Query: 121 aactgcacattcttctgcaagcagagatttttcgagaagaagtaggcagtgttttataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aactgcacattcttctgcaagcagagatttttcgagaagaagtaggcagtgttttataga 683

                                                                       
Query: 181 atttcaaagagatgggaggctaaatgatgagcgaatgtatgtactgggtagctgaggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 atttcaaagagatgggaggctaaatgatgagcgaatgtatgtactgggtagctgaggaga 623

                                                                       
Query: 241 gcaagtggaccagggaggggctgttgttgctgttttcacgtgcacacgcgctatagtaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gcaagtggaccagggaggggctgttgttgctgttttcacgtgcacacgcgctatagtaga 563

                                                                       
Query: 301 ctgtgactttctccttatttctcttgacttaggacttggggtattgaatcacataccaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctgtgactttctccttatttctcttgacttaggacttggggtattgaatcacataccaga 503

                                                                       
Query: 361 tacacagtctctgctattctttattgtccgagggtatcatttgtagtgcctccccccaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tacacagtctctgctattctttattgtccgagggtatcatttgtagtgcctccccccaaa 443

                                                                       
Query: 421 gtccaagtggtaaaagcttggctcccacaggaagtagcggaacctataggaagtgggtgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gtccaagtggtaaaagcttggctcccacaggaagtagcggaacctataggaagtgggtgt 383

                                                                       
Query: 481 taggtttttaggtcattggcagaactgcctttgaaggaaatggcaggtctcagtttagtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 taggtttttaggtcattggcagaactgcctttgaaggaaatggcaggtctcagtttagtt 323

                                                                       
Query: 541 ctcttctagggtcttccagacacacagaagtagcttccctcactaccataggacttgtta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctcttctagggtcttccagacacacagaagtagcttccctcactaccataggacttgtta 263

                                                                       
Query: 601 gactccaaacagtcagagaaacaggaagctgactcagggcatctgctatcacatcatgtc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gactccaaacagtcagagaaacaggaagctgactcagggcatctgctatcacatcatgtc 203

             
Query: 661 cc 662
           ||
Sbjct: 202 cc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)