BAC Information

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BAC

Clone NameMSMg01-484L11
Chromosome8 (Build37)
Map Location 9,549,126 - 9,549,365
singlet/doubletsinglet
Overlap geneTmem28
Upstream geneLOC100039836, Efnb2, 9430010O03Rik
Downstream geneLig4, Abhd13, Tnfsf13b, Myo16
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484L11.T7 (MSMg01no484_l11.b1)MSMg01-484L11.TJ (MSMg01no484_l11.g1)
ACCAG564336AG564337
length7461,024
length of high quality
(start - end)
239 (79 - 317)---
definitionCHROMAT_FILE: MSMg01no484_l11.b1 PHD_FILE: MSMg01no484_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:23 2005CHROMAT_FILE: MSMg01no484_l11.g1 PHD_FILE: MSMg01no484_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGAGCGC
GGAATTCAGTATATTTCTAAAAAAAGAAACCATGAGAAGAATAAGACTTC
AATAAATCTGTTCCTTTTAAATACATTCTAGTAAATGACTGCTGTAGAAT
CAAGCCAGGGCCATGCTTCACTCTGCAAGGTATTCATTTCCTTTCATGTA
ATATTTTTTAATCGCTCTCTAATTCTCATACCCCAGGAGAAATAATGATA
TATTTCTCATGTAATTATGACTTTCCTGTGTTCACTGGAACACAAAGCAG
CAACTAAATCAGTCAGATTAGTANATTTTAGAGTTGGGGGGGGGGGCAGA
GGGGCAGACATCACCTTAGCCTCCAGGTTTGGATTCAATTTCTTGGTAAC
ATTTTGAGATGGAATTGTTGCAGAGTGTGGATGGAATGGAGAAGTGTGCG
GATCAGTGGGCCGTTCTATGCACAGTTCAATGTTTAGAATCTCTGTATGT
TGCCAGAAGAGAGGGCCCTAGTAGACTTTTTTCTTGCTGGCTATGTGCCC
TGTTTTGGCTGTAAAGAATGCACACGAAAGCTATTTTTTTTCCAGTTTCA
ACTCAGCCATGACCCCCCTGCCCCACCCCCATTTTTGTGCTGGATTAATG
AATATAATATGCAATTGACAGTGAGAGTCTAAACCAAAGTATGAAGCTCC
CGTGGCCTCAGAATGACCATCCTAACTGGACAGGCATTCACTAAGN
TATACAAATGCACGCACGCTAAGTGAAACAAACGCCACTCTTCTCCCATA
GCGGGGCGGAGTAGAAGGTATGGTTCCCTCTGTAATTACACGTTTTAAAG
TCATGAATGTTTATTTAAGTTTATTATTCGCAATATACACAATACTCTAA
AACAAGACCATAACAGCGCGGCATTTACATAAGTTGAAATCGCGTCCGTG
GAAGGAACGATAAAAGGGATGCCTACTCGTTGAGCCGCGTCCGACGCGCG
GTATATTGGACATAATATACAGAGACCCAGCTCTATATCCATCCCGTGAT
CACCCTTATTTGCACTACTCCAGTATATCAATACATTAAGCGTATTATCA
CGCCCACCCGACAACGGTACTATGCCACCGAAACCTCCCGCCTAATTTTT
AGATTTCACATCTACACCACAGATCGATGTCCGTCACCGCGGATTAGATG
CATCACTCACTATGAAATTTCGACTTTATGAGCATGTCTGAGCTTCTGCT
CCGTTCGCACTACGCGATACCCCATACGTTGGATAGCTCTCTTGCTGGAA
CCAACCTTCAACGGTCGGATGACGTACTACGCACTCTNTAATGATCCCAC
TTAACGCAGCGTTTGAACGCAATGTTTCTGACCTCTTCACTCACTATTGC
TGTAAGTCGCCTACTTAAACACCCTTTATGGTCACACGTCCTGTAGTTCG
CACCTCAATTCACATACCTACCACCATCATTATATTAATTACCCACGGCG
ACCTAAAGAGTTCGGACACTACATAACCGATCTATTCCCGACTTTTATTG
GCAATACACGCATTAAACTATATAGTCATATCCTCTGCCTAAGTAAATAC
TCGCAATATGCTCTACCTCGAACAACTTGGAGCGTATAACCAATTGAGCA
CGTCACACTAACCACGTGTTCACCACAACACTCCTTTGTCGTGAAACGCC
GGTGATTTACAGTGTTTACCCGCCACCACTGACTTTCTTGCTATTAACAC
CGCACTTTACTACGCATTAACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_l11.b1 MSMg01no484_l11.b1 CHROMAT_FILE:
MSMg01no484_l11.b1 PHD_FILE: MSMg01no484_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:23 2005
         (239 letters)



>mm_chr8_9548926_9549565
          Length = 640

 Score =  420 bits (217), Expect = e-122
 Identities = 235/241 (97%), Gaps = 3/241 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   accatgagaagaataagacttcaataaatctgttccttttaaatacattctagtaaatga 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 accatgagaagaataagacttcaattaatctgttccttttaaatacattctagtaaatga 381

                                                                       
Query: 61  ctgct-gtagaatcaagccagggccatgcttcactctgcaaggtattcatttcctttcat 119
           ||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctg-tggtagaatcaagccggggccatgcttcactctgcaaggtattcatttcctttcat 322

                                                                       
Query: 120 gtaata-ttttttaatcgctctctaattctcataccccaggagaaataatgatatatttc 178
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 gtaatatttttttaatcgctctctaattctcataccccaggagaaataatgatatagttc 262

                                                                       
Query: 179 tcatgtaattatgactttcctgtgttcactggaacacaaagcagcaactaaatcagtcag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatgtaattatgactttcctgtgttcactggaacacaaagcagcaactaaatcagtcag 202

            
Query: 239 a 239
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 640
Length adjustment: 9
Effective length of query: 230
Effective length of database: 631
Effective search space:   145130
Effective search space used:   145130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)