Query= MSMg01no485_l13.b1 MSMg01no485_l13.b1 CHROMAT_FILE:
MSMg01no485_l13.b1 PHD_FILE: MSMg01no485_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:46 2005
(588 letters)
>mm_chr8_111771472_111772459
Length = 988
Score = 1065 bits (551), Expect = 0.0
Identities = 580/591 (98%), Gaps = 5/591 (0%)
Strand = Plus / Plus
Query: 1 attctttgtgcat-ttcatattatgcatgttttccatgtgactcctcacttgccctcacc 59
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 attctttgtgcatattaatattatgcatgttttccatgtgactcctcacttgccctcacc 259
Query: 60 ccatcctttgaattcatttaaataaaaataatttatgtggacattccttcagtcgggatt 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 260 ccatcctttgaattcatttaaataaaaataatttatgtggacattccttcagtcaggatt 319
Query: 120 t--tctttctctttcttaaagacatccataacactcagttgatgctttgcatccaaacca 177
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttctctttctctttcttaaagacatccataacactcagttgatgctttgcatccaaacca 379
Query: 178 agtcgttatgcctttgcatgtcattagagctttataaagaacaacagcgacatctgcatg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agtcgttatgcctttgcatgtcattagagctttataaagaacaacagcgacatctgcatg 439
Query: 238 tgccgaggtgccaggagataggagaaaaaaaaaataccgaaaacaaaactcctcactagc 297
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 440 tgccgaggtgccaggagataggag--aaaaaaaataccgaaaacaaaactccacactagc 497
Query: 298 ttggaggctctttctccccagcagcgcctgccaccactgtggataggagtaattgtacag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttggaggctctttctccccagcagcgcctgccaccactgtggataggagtaattgtacag 557
Query: 358 tgtaatcacatcatgtctcatctgaatattcatagcagagacaaagctttggaggataag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgtaatcacatcatgtctcatctgaatattcatagcagagacaaagctttggaggataag 617
Query: 418 ggaggagtggagataatttaaatataagccagcgtctcatttccaaatcaagttgtgcag 477
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 618 ggaggagtggagataatttaaatataagccagtgtctcatttccaaatcaagttgtgcag 677
Query: 478 ttatgccgcgcaccaggattcaatattaaaccaacaccgtttcacagttcgaaaatagga 537
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttatgccgtgcaccaggattcaatattaaaccaacaccgtttcacagttcgaaaatagga 737
Query: 538 cacgaagaagacggaaggggcatggtaaagaaagagcgggattacattctc 588
||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 738 cacgaagaagacggaaggggcatggtaaagaaagagcggtattacattctc 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_l13.g1 MSMg01no485_l13.g1 CHROMAT_FILE:
MSMg01no485_l13.g1 PHD_FILE: MSMg01no485_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:46 2005
(380 letters)
>mm_chr8_111954209_111954988
Length = 780
Score = 706 bits (365), Expect = 0.0
Identities = 376/380 (98%)
Strand = Plus / Minus
Query: 1 agagacaccgtgggcagcattgtgcttgcgcactggaggcactctggaagtggtagctat 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agagacaccatgggcagcattgtgcttgcgcactggaggcactctggaagtggtagctat 521
Query: 61 caaccaatactattttactagatttctgttattggctatttaggttgtttctgattgttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 520 caaccaatactattttactagatttctgttattggctatttaggttgtttctgatcgttc 461
Query: 121 attaccaggtaaaacatcattcttatactaaccacagtaatgtacctgaaataatacaca 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 attaccaggtgaaacatcattcttatactaaccacagtaatgtacctgaaataatacaca 401
Query: 181 tatatgtgtatggacaagtgtcttaagtagaacttccaagggaatgtgggttatggcata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tatatgtgtatggacaagtgtcttaagtagaacttccaagggaatgtgggttatggcata 341
Query: 241 gacacacatacacacacatgcatttttagtggctgatttggttaaagcagacagaagtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gacacacatacacacacatgcatttttagtggctgatttggttaaagcagacagaagtat 281
Query: 301 cctcaactggattgacccgtagagagtggagccctaangctgttgatgcccaatggtata 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 280 cctcaactggattgacccgtagagagtggagccctaaggctgttgatgcccaatggtata 221
Query: 361 tgccgccagatggctggaga 380
||||||||||||||||||||
Sbjct: 220 tgccgccagatggctggaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space: 286041
Effective search space used: 286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
