Query= MSMg01no486_a08.b1 MSMg01no486_a08.b1 CHROMAT_FILE:
MSMg01no486_a08.b1 PHD_FILE: MSMg01no486_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:11 2005
(645 letters)
>mm_chr8_115868519_115869564
Length = 1046
Score = 779 bits (403), Expect = 0.0
Identities = 433/443 (97%), Gaps = 3/443 (0%)
Strand = Plus / Minus
Query: 205 gtgcatgtgtgtgtattggggtggggtggagtatgtgcttatgtgagtgaaacaccagtg 264
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1046 gtgcatgtgtgtgtattggggtggggtggagtatgtgcacatgtgagtgaaacaccagtg 987
Query: 265 ggaagcagaagaggataccgtatcccttggagctggagttataggctgttgtaagtcacc 324
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 ggaagcagaagaggatgccgtatcccttggagctggagttataggctgttgtaagtcacc 927
Query: 325 gtgttgggagcagggacccaaactctagttcactgtaagggcagtcagtactctgaaact 384
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 gtgttgggagcggggacccaaactctagttcactgtaagggcagtcagtactctgaaact 867
Query: 385 ctgagctaaatctccatccctttacttttgtgttttccaaaataaatattaaggcttaaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ctgagctaaatctccatccctttacttttgtgttttccaaaataaatattaaggcttaaa 807
Query: 445 taaagtgagatcacttcttgctgggatgattgtacaggtggagcaatacatgtaacaagg 504
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 806 taaagtgagatcacttcttgctgggatgattgtacaggtggagcaatatatgtaacaagg 747
Query: 505 gcac-aggtgacagaagccacatcaacttcactttgtattttccatgaag-aaaaaaatc 562
|||| | ||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 746 gcacta-gtgacaggagccacatcaacttcactttgtattttccatgaagaaaaaaaatc 688
Query: 563 tgcgaggagttaaggaaaattacagtaacttcccaagtagtctctgctaaccagagtttc 622
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 687 tgcgaggagttaaggaaaattacagtaacttcccaagtagcctctgctaaccagagtttc 628
Query: 623 acaggagagcaaaacacactgca 645
|||||||||||||||||||||||
Sbjct: 627 acaggagagcaaaacacactgca 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space: 657860
Effective search space used: 657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_a08.g1 MSMg01no486_a08.g1 CHROMAT_FILE:
MSMg01no486_a08.g1 PHD_FILE: MSMg01no486_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:12 2005
(668 letters)
>mm_chr8_115827248_115828316
Length = 1069
Score = 1263 bits (653), Expect = 0.0
Identities = 665/669 (99%), Gaps = 1/669 (0%)
Strand = Plus / Plus
Query: 1 tctgcctgagactcatcacagcagagaggctcatctggcagccatctggctgattgggaa 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcctaagactcatcacagcagagaggctcatctggcagccatctggctgattgggaa 260
Query: 61 tatcccgattcatttagagctatccttgatcgctggaaactttgtcgcctgctcatcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcccgattcatttagagctatccttgatcgctggaaactttgtcgcctgctcatcatg 320
Query: 121 cacgtactcagcacggctctgtgcttgcttggtgacaggcagtggatcaggagccaagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacgtactcagcacggctctgtgcttgcttggtgacaggcagtggatcaggagccaagaa 380
Query: 181 aaaattatgagtctaggctatgctggagtcctacctctgcacctctcttctagattattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaattatgagtctaggctatgctggagtcctacctctgcacctctcttctagattattc 440
Query: 241 tttcccttctaccttatagttcacgttctatacagatgctctgtgatcaaaaagtgctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcccttctaccttatagttcacgttctatacagatgctctgtgatcaaaaagtgctat 500
Query: 301 tgtttagataccaacacccctaccaagtgcctttgttctgcttccagatcaaataaagta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtttagataccaacacccctaccaagtgcctttgttctgcttccagatcaaataaagta 560
Query: 361 ttccaatttagttgccattgaagataaagaggaatgatcaaagacacaaagagacttatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttccaatttagttgccattgaagataaagaggaatgatcaaagacacaaagagacttatt 620
Query: 421 tactccaaattaaaagcacaatagatcaagtagtgctttgttttataggtaatttcatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tactccaaattaaaagcacaatagatcaagtagtgctttgttttataggtaatttcatga 680
Query: 481 ctaaaaccacaccgtaataatatagtttggaactgcttcctacacaccacaccattgtgt 540
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 681 ctaaaaccacaccgtaataatatagtttggaaccgcttcctacacatcacaccattgtgt 740
Query: 541 ctcagaaatagaatttttctaaaatgtattttattcttatatgaagtattattcataatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctcagaaatagaatttttctaaaatgtattttattcttatatgaagtattattcataatt 800
Query: 601 gcagtatgttttaatctgtaattcttttttttt-caaacagtggacatgaaagctctata 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 801 gcagtatgttttaatctgtaattcttttttttttcaaacagtggacatgaaagctctata 860
Query: 660 atgcaatac 668
|||||||||
Sbjct: 861 atgcaatac 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1069
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1059
Effective search space: 696822
Effective search space used: 696822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
