BAC Information

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BAC

Clone NameMSMg01-487H23
Chromosome8 (Build37)
Map Location 61,319,055 - 61,319,580
singlet/doubletsinglet
Overlap gene4930431L04Rik
Upstream genenone
Downstream geneBC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487H23.T7 (MSMg01no487_h23.b1)MSMg01-487H23.TJ (MSMg01no487_h23.g1)
ACCAG566447AG566448
length1,409804
length of high quality
(start - end)		---523 (74 - 596)
definitionCHROMAT_FILE: MSMg01no487_h23.b1 PHD_FILE: MSMg01no487_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:07 2005CHROMAT_FILE: MSMg01no487_h23.g1 PHD_FILE: MSMg01no487_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAATCATAAATAANTACTCGCGCTANACATGCTNCGCTGAGATNTAANA
TATATGCCAGCTCGTAGTATTTCATGAAGTGAGTGCCGACAGTGTGTATG
TGTTGCAGTTGTATCATTCTCTANCATGCACGAGTGTAGATCAGATCAGT
ATCGTGCACAAGTAGCTAGACATACATCTCACATAGCTAGATGAGCACAC
ACTAATACCACGACTGCGTAGTCATCGATACTCTATCTCGCAATAGGCGC
TACTGCGCATTATACCAACATATTGACATTACACTGTAAGACTGAAAAGC
ACTACACTATACCATTATTGATGTACACTACCTACGCATATACCTCCCCA
CACACTATTACTATATGTAAATCGCAGTGATATATCACCTGTACTGACGA
TCATCTGACAGCAGCTATTTACGCAGACGCTTGTACTGATATTACTCGTA
ACGTGTTGTGCGCGTACCATAGGGCATGTGTATGTGCTATGACTANTGAT
ACGACTGATCACCTTGCTGTAGTGTACATCGCCCTCTACTATTCAGTATG
TGTACAGCACAACTACCGCGACAACTCACCCAGCTATTTATAATCATAAT
CATATATAACGTGCTGATCTCAGTTATCGCTGCTACTAATACTATTATCG
CGCGCTCGTGTCTTTTATCAACTCTTTGTCGTCCTCTATACTCTACACAC
GACACCAAACACATTAGTTACAACTTCTTTTGCAGCAGCCAGATTTACAT
ATGACAACACTATCTCTCATTCTNATTATCACGATACTTTACATATACGA
TGTCGACCGCACGCGTTGCTACTACGATTTTATTCTTATGATTCATATAT
CTACATCTAACAGNATCTACCACATTATGGTACTGGCACACTACACGTGT
GCACTANCCGCTACGTGATGTTATCTTACTATCTGAACTGACCACTACTC
ATAATTCATATCGTGTATCGATCAGTATGTCGCACTGTGTTGCCTATTAT
ACATGGAGGCAGCCCTCGCCTGACCTGTTACTACTATAGTATGCACCACT
TGATGCATGTATTACGCGTATACTTGATACTGTTGCTGCACATACTTATT
CTACATGGATCATCCTCACGTGACTCGCGATCCTTTGAACTCATACATCC
TGTGATAGTCATACCCAGCAGTACGCTTCTAGCNACTATGTTAGTGTAAT
ACTCGTAGAATATACATCCTGCACAGTNACCGTATCCACCTCGACCATAA
TTATACTATCTGTGACATGCACCTGTATCTCTTGATTACAATTAANTGAG
ACACCACCACACGTGCNCNACCGCGCTTCTGCTCTCACAGCATGCCTTAC
TATGCCACGCAGCTGACATACTCTCCTGACTACCATCTGTAATCATTACT
CTCACGCAN

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGTTGTGATAAGCTGGGGAGAAG
AAAAGAGGAACATATCATATGAAACCAGATTGTCCTCTTCTATCCCAAAT
AAAATATCATATGACCTTGCTATTGTTATTCATTACTTGACAAAATCTAG
AAGAATCTAGAAAATATGTCTCTTGATAAGGTTACAGGAGAGTAGAATGC
CTTGATTACATGACATAAACTGATATGGGAAGTCCTCAATTTAATTGAAA
TGAAAACATATGTACACTTCCATCAAGTCTTGGATTAGGATAATTTCTTG
CTGGATCATACAATGTAAGTAGAAATTCTTAAATCTATATTTTACTTTTA
AATTAAACAGCTAAGCTTAATTTATAAGTTGCTCAATTACACTGTTATGA
ATATGTGCAGTAGTCTTTTGTCAACACTTGTTCTCCCTAGGTAACACTAA
TACCTTAGACAAATCTCTGTTATTTTAATTGCATCTTCATCTATGCATGT
ATTTAAATTTCAAACATTAACTTCATGTGCTGCACAACATTGGCCATACA
ACTAAATATCTTTGTAACTCTGTTTCTTCATCTTTAATATAAACATAGGA
AGATTTGGTATTATCCCCTGTAATAACTGGATTATTTTTTAGATTTAATT
ATCAAAGGCATGTGATAGACATAAATGGTCACAAAGCACTTGGTAGTAAT
CAGAGCCACCTTTTTCATTGGTGATAATCAATATAGCAGTGAAATCTCCC
CCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_h23.g1 MSMg01no487_h23.g1 CHROMAT_FILE:
MSMg01no487_h23.g1 PHD_FILE: MSMg01no487_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:08 2005
         (523 letters)



>mm_chr8_61318855_61319777
          Length = 923

 Score =  961 bits (497), Expect = 0.0
 Identities = 518/527 (98%), Gaps = 5/527 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcagttgtgataagctggggagaagaaaagaggaacatatcatatgaaaccagattgt 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tttcagttgtgataagctggggagaagaaaagaggatcatatcatatgaaaccagattgt 260

                                                                       
Query: 61  cctcttctatcccaaataaaatatcatatgaccttgctattgttattcattacttgacaa 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 cctcttctatcccaaataaaatatcatatgatcttgctattgttattcattacttgacaa 320

                                                                       
Query: 121 aatctagaagaatctagaaaatatgtctcttgataaggttacaggagagtagaatgcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatctagaagaatctagaaaatatgtctcttgataaggttacaggagagtagaatgcctt 380

                                                                       
Query: 181 gattacatgacataaactgatatgggaagtcctcaatttaattgaaatgaaaacatatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattacatgacataaactgatatgggaagtcctcaatttaattgaaatgaaaacatatgt 440

                                                                       
Query: 241 acacttccatcaagtcttggattaggataatttcttgctggatcatacaatgtaagtaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacttccatcaagtcttggattaggataatttcttgctggatcatacaatgtaagtaga 500

                                                                       
Query: 301 aattcttaaatctatattttacttttaaattaaacagctaagcttaatt----tataagt 356
           |||| ||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 501 aatttttaaatctatattttacttttaaattaaacagctaagcttaattaatttataagt 560

                                                                       
Query: 357 tgctcaattacactgttatgaatatgtgcagtagtcttttgtcaacacttgttctcccta 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctcaattacactgttatgaatatgtgcagtagtcttttgtcaacacttgttctcccta 620

                                                                       
Query: 417 ggtaacactaataccttagacaaatctctgttattttaattgcatcttcatctatgcatg 476
           ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 621 ggtaacactaataccttagacaagtctctgtt-ttttaattgcatcttcatctatgcatg 679

                                                          
Query: 477 tatttaaatttcaaacattaacttcatgtgctgcacaacattggcca 523
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tatttaaatttcaaacattaacttcatgtgctgcacaacattggcca 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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