BAC Information

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BAC

Clone NameMSMg01-488C16
Chromosome8 (Build37)
Map Location 55,083,338 - 55,219,545
singlet/doubletdoublet
Overlap geneVegfc
Upstream geneAga, Neil3, LOC100040107
Downstream geneSpcs3, Asb5, Spata4, Wdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488C16.T7 (MSMg01no488_c16.b1)MSMg01-488C16.TJ (MSMg01no488_c16.g1)
ACCAG566955AG566956
length672732
length of high quality
(start - end)		626 (47 - 672)624 (75 - 698)
definitionCHROMAT_FILE: MSMg01no488_c16.b1 PHD_FILE: MSMg01no488_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:00 2005CHROMAT_FILE: MSMg01no488_c16.g1 PHD_FILE: MSMg01no488_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,218,942 - 55,219,545)(55,083,338 - 55,083,961)
sequence
GACTCACTATTCGGAGAGGATCCGCGGAATTCAGATTCTGCTTACATGCG
TGAATTAAAACTACACCACTTATAGCACCATATGCAATTTCATCTTTGTG
ACATTGGGTTCTATAAAACTTTGATTTGCCATCAAGAGCAACACTTTTGG
AAATAGGAATAAGTTGGATTAATCAACATGGCAGTTTTGTTCTTCAATGA
AAAGCGTTATAAATTAAAAACCAATAAAACAGTTCAGTTGATATAGGTAC
ATGCGTCCAAGCTAGAGGACTCAGGGTAAATAAAAGAGACCCAAATGACA
GAAGGAAAAAATTTCCATTTTTGCACAGTAGCTGGGGGATGAATAGAAGA
ACTGTGGGTACACAGTTTTGAAGTTCATGCTTCAGTCGGCACATCAATTC
AGTTGTCTCTCCTTATGTAACCTATTCATTTTCATCTTAAAAAATTGGTC
CATGATAGATAGCCTTTTGTGAGTGTTCCATAGCCTCAGTAATAGTGTCA
GGCCATGGGACTTCCCCTTGAGCTGGATGCCACTTTGGGTCTGTCACTGG
ACCATCTTTTCCTCAGGCTCCTCTCCATTTCTCTCCCTGTAATTCTTTCA
GACAGAAACAATTATGTGTCAGAGGTGTGACTGTGGGATGGCAACCCCAT
CAGTCCCCAACTTGATGTCCTG

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTAGTTTCCTGTAGTTCTTTGTATA
GGGTTGAAACAATCTAAAAAAAGAAAAGAAATAACTTAAAAAATAAAGCA
GGAAAGCAGATAAATTCTGCTGGACAGTTCCTTCTTCAGCTTGTGGGATA
TTTTCAATATAGGATCTACCCAGCCTTGACTAGTATTTTGATGAACAAAA
TATTTTTTCAGATGTGTTCCGAGGAGATCAGCACTTAGTTCTGTTGACCA
CCTTTCTGTTCTTACACCTGAGATGAACTTGTTAAAAAAATAAAAATTTT
GATCTCCTAATATTGGAGGTCCTGTCCATATTTGGGTTGACCATGCAGTT
TTTTGGTACTATGTCAAAGCAATACCTAATAACATCGTTAATGATGAAGC
AAAACCATACATTTCACTACTATCAAGAAAATAGCTGGGCAGAAGGAGAT
CAGAGTACCACCACCTCCTTCAAAACCTCCTGAGCTGCCTGATAAACACC
AACAGGCCCCACATCTAAAGTGTTTCACTTTGACATATTATAAAAATAAA
TTGTATATATACAAAATTACTAAAGACAAGTGAAAGATTTGTTTCAAAAT
ATTACATAGCTATTTAAGGCATTAGTTTCTATAAGTTAAGACTTTGTTCT
CTTAGTTAATTTTTTGGGGTTTGATATTCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_c16.b1 MSMg01no488_c16.b1 CHROMAT_FILE:
MSMg01no488_c16.b1 PHD_FILE: MSMg01no488_c16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:00 2005
         (626 letters)



>mm_chr8_55218942_55219967
          Length = 1026

 Score = 1083 bits (560), Expect = 0.0
 Identities = 593/604 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   tgaattaaaactacaccacttatagcaccatatgcaatttcatctttgtgacattgggtt 64
           |||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 604 tgaattaaaactatgccacttataacaccatatgcaatttcatctttgtgacattgggtt 545

                                                                       
Query: 65  ctataaaactttgatttgccatcaagagcaacacttttggaaataggaataagttggatt 124
           ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 544 ctataaaactttgatatgccatcaaaagcaacacttttggaaataggaataagttggatt 485

                                                                       
Query: 125 aatcaacatggcagttttgttcttcaatgaaaagcgttataaattaaaaaccaataaaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aatcaacatggcagttttgttcttcaatgaaaagcgttataaattaaaaaccaataaaac 425

                                                                       
Query: 185 agttcagttgatataggtacatgcgtccaagctagaggactcagggtaaataaaagagac 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 agttcagttgatatagatacatgcgtccaagctagaggactcagggtaaataaaagagac 365

                                                                       
Query: 245 ccaaatgacagaaggaaaaaatttccatttttgcacagtagctgggggatgaatagaaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ccaaatgacagaaggaaaaaatttccatttttgcacagtagctgggggatgaatagaaga 305

                                                                       
Query: 305 actgtgggtacacagttttgaagttcatgcttcagtcggcacatcaattcagttgtctct 364
           ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 actgtaggtacacaattttgaagttcatgcttcagtcggcacatcaattcagttgtctct 245

                                                                       
Query: 365 ccttatgtaacctattcattttcatcttaaaaaattggtccatgatagatagccttttgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ccttatgtaacctattcattttcatcttaaaaaattggtccatgatagatagccttttgt 185

                                                                       
Query: 425 gagtgttccatagcctcagtaatagtgtcaggccatgggacttccccttgagctggatgc 484
           ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
Sbjct: 184 gagtgttccatagcctcagtaattgtgtcaggccatgggacttccccttgaactggatcc 125

                                                                       
Query: 485 cactttgggtctgtcactggaccatcttttcctcaggctcctctccatttctctccctgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 cactttgggtctgtcactggaccatcttttcctcaggctcctctccatttctctccctgt 65

                                                                       
Query: 545 aattctttcagacagaaacaattatgtgtcagaggtgtgactgtgggatggcaaccccat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  aattctttcagacagaaacaattatgtgtcagaggtgtgactgtgggatggcaaccccat 5

               
Query: 605 cagt 608
           ||||
Sbjct: 4   cagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no488_c16.g1 MSMg01no488_c16.g1 CHROMAT_FILE:
MSMg01no488_c16.g1 PHD_FILE: MSMg01no488_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:00 2005
         (624 letters)



>mm_chr8_55083138_55084161
          Length = 1024

 Score = 1160 bits (600), Expect = 0.0
 Identities = 618/624 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttagtttcctgtagttctttgtatagggttgaaacaatctaaaaaaagaaaagaaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttagtttcctgtagttctttgtatagggttgaaacaatctaaaaaaagaaaagaaataa 260

                                                                       
Query: 61  cttaaaaaataaagcaggaaagcagataaattctgctggacagttccttcttcagcttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaaaaaataaagcaggaaagcagataaattctgctggacagttccttcttcagcttgt 320

                                                                       
Query: 121 gggatattttcaatataggatctacccagccttgactagtattttgatgaacaaaatatt 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggatatttgcaatataggatctacccagccttgactagtattttgatgaacaaaatatt 380

                                                                       
Query: 181 ttttcagatgtgttccgaggagatcagcacttagttctgttgaccacctttctgttctta 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ttttcagatgtgttccgaggagatcagcacttagttttgttgaccacctttctgttctta 440

                                                                       
Query: 241 cacctgagatgaacttgttaaaaaaataaaaattttgatctcctaatattggaggtcctg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 cacctgagatgaacttgttaaaaaaataaaaattttgatctcctaatattggaggtcccg 500

                                                                       
Query: 301 tccatatttgggttgaccatgcagttttttggtactatgtcaaagcaatacctaataaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccatatttgggttgaccatgcagttttttggtactatgtcaaagcaatacctaataaca 560

                                                                       
Query: 361 tcgttaatgatgaagcaaaaccatacatttcactactatcaagaaaatagctgggcagaa 420
           |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 561 tcgttaatgatgaagcaaaaccattcattttactactatcaagaaaatagctgggcagaa 620

                                                                       
Query: 421 ggagatcagagtaccaccacctccttcaaaacctcctgagctgcctgataaacaccaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggagatcagagtaccaccacctccttcaaaacctcctgagctgcctgataaacaccaaca 680

                                                                       
Query: 481 ggccccacatctaaagtgtttcactttgacatattataaaaataaattgtatatatacaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggccccacatctaaagtgtttcactttgacatattataaaaataaattgtatatatacaa 740

                                                                       
Query: 541 aattactaaagacaagtgaaagatttgtttcaaaatattacatagctatttaaggcatta 600
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aattactaaagacaagtgaaaaatttgtttcaaaatattacatagctatttaaggcatta 800

                                   
Query: 601 gtttctataagttaagactttgtt 624
           ||||||||||||||||||||||||
Sbjct: 801 gtttctataagttaagactttgtt 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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