BAC Information

Click to search

BAC

Clone NameMSMg01-489A20
Chromosome8 (Build37)
Map Location 72,337,562 - 72,338,174
singlet/doubletsinglet
Overlap geneGmip
Upstream geneInts10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1
Downstream geneEdg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489A20.T7 (MSMg01no489_a20.b1)MSMg01-489A20.TJ (MSMg01no489_a20.g1)
ACCAG567629AG567630
length769751
length of high quality
(start - end)		595 (50 - 644)613 (73 - 685)
definitionCHROMAT_FILE: MSMg01no489_a20.b1 PHD_FILE: MSMg01no489_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:09 2005CHROMAT_FILE: MSMg01no489_a20.g1 PHD_FILE: MSMg01no489_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGACCG
CGGAATTCAATTCCCTTCCCCACATGGTTTCTCACAACCATCTGTAATGG
GATCTGATGCTCTCTCTGGTGTGTCTGAAGAAAGCAATGGTGTACTCATA
TTCATAAATAAATCTTTTTTTCTTTTCCAGACAGGGTTTCTCTGTACAGC
TCTGGCTGTCCTGGAACTCACTCTTTAGACCAGGCTGGCCTAGAACTCAG
AAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGCATTAAAGGCATGTGCCA
CCATGCCCGGCATACATAAATATATCTTAAAAAAAAAAAAGAGACATATG
CAACTTTTATGTTCATAATAAGCCTTAATCAGCACTAGGCCTGGGCAGAT
AAGAGTCTACTTTTCTATCGATAATTCTGAGCTATTATTTATTATGTTTC
ATCTGGGCTGCTCTTAAACTCCAATTGGCCAGCCCTAAGGGCTATGTTCT
TTTATTCCTAGACCATTATGTCTTTCTTCTCCACTCACCTTCTTCTCTCT
CTAATTTGGTCCCTAACTAGAGGGGAAGTAAGTATCACCTTTAAAAATCA
TTGTTGGCTCTGTGTTTCCAATTATAAAGGACACTTTATTCATAAACTGT
TTTACTTGGGATTTTTCTTTTGTCACTTTTTGAATCTGCATAGGAAAGTT
ATCTTTATATTTAGCACGGGTTTATCTTTGCACATTCAGACCAACTCCAG
GTCCATGCCCTCTTAATTC

NNCCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAGGAACAGTGGCTGAAGGAGCAGAAG
CGCATGGTAAGGCCAGGCGTGGGTGGGCCCTGCCCGGAAGAACAGAGTCC
TCTGCAGGCCAACGGCTTATGGTCCTCTTGCTGCCTCCAAGAATGAGGCA
GTGCAGGCACTGCGGCGCTCCGAGCTCCAGTACATTCAACGCAGAGAGGA
CCTGAGGGCACGCTCCCAGGGGTCCCCTGAGGACCCTCCTTCCCAGGCAT
CTCCTGGATCCAACAAGCAACAGGAGCGCAGACGGCGCTCCCGAGAGGAG
GCACAGGCCAAGGTCGGAAACACAGTACCGAGATTCCCTAACGTCTAGTC
GCTCACCTCTCTCTAACTCCCAACCACTTAAGCCTTGGTTTCCCCAGGCG
CATGAGGCGGAGGCTCTGTACCAGGCCTGTGTCCGGGAGGCCAATTCTCG
CCAGCAGGATCTGGAGACCACCAAGCGGCGGATAGTGTCACATGTGCGCA
AGCTGGTGCTGCAAGGAGACGAAGTGCTTAGGCGGGTAAGGCCCTCCTCC
ACAGTCACCCTTGTTTCATTGTCCTTAGGCACCAGCCCTGAGCCCCCAGG
ACACCATCTTTACTGTAGGCCCCATACCCTGATGACNACCCAAACCTAGT
CCTACAGCCTACCAGTGACAGGGCCCGNCCTCAGACATTGGCTTTGCTCT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_a20.g1 MSMg01no489_a20.g1 CHROMAT_FILE:
MSMg01no489_a20.g1 PHD_FILE: MSMg01no489_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:09 2005
         (613 letters)



>mm_chr8_72337362_72338374
          Length = 1013

 Score = 1185 bits (613), Expect = 0.0
 Identities = 613/613 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaggaacagtggctgaaggagcagaagcgcatggtaaggccaggcgtgggtgggccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaggaacagtggctgaaggagcagaagcgcatggtaaggccaggcgtgggtgggccctg 260

                                                                       
Query: 61  cccggaagaacagagtcctctgcaggccaacggcttatggtcctcttgctgcctccaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccggaagaacagagtcctctgcaggccaacggcttatggtcctcttgctgcctccaaga 320

                                                                       
Query: 121 atgaggcagtgcaggcactgcggcgctccgagctccagtacattcaacgcagagaggacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaggcagtgcaggcactgcggcgctccgagctccagtacattcaacgcagagaggacc 380

                                                                       
Query: 181 tgagggcacgctcccaggggtcccctgaggaccctccttcccaggcatctcctggatcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagggcacgctcccaggggtcccctgaggaccctccttcccaggcatctcctggatcca 440

                                                                       
Query: 241 acaagcaacaggagcgcagacggcgctcccgagaggaggcacaggccaaggtcggaaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaagcaacaggagcgcagacggcgctcccgagaggaggcacaggccaaggtcggaaaca 500

                                                                       
Query: 301 cagtaccgagattccctaacgtctagtcgctcacctctctctaactcccaaccacttaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtaccgagattccctaacgtctagtcgctcacctctctctaactcccaaccacttaag 560

                                                                       
Query: 361 ccttggtttccccaggcgcatgaggcggaggctctgtaccaggcctgtgtccgggaggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttggtttccccaggcgcatgaggcggaggctctgtaccaggcctgtgtccgggaggcc 620

                                                                       
Query: 421 aattctcgccagcaggatctggagaccaccaagcggcggatagtgtcacatgtgcgcaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aattctcgccagcaggatctggagaccaccaagcggcggatagtgtcacatgtgcgcaag 680

                                                                       
Query: 481 ctggtgctgcaaggagacgaagtgcttaggcgggtaaggccctcctccacagtcaccctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggtgctgcaaggagacgaagtgcttaggcgggtaaggccctcctccacagtcaccctt 740

                                                                       
Query: 541 gtttcattgtccttaggcaccagccctgagcccccaggacaccatctttactgtaggccc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtttcattgtccttaggcaccagccctgagcccccaggacaccatctttactgtaggccc 800

                        
Query: 601 cataccctgatga 613
           |||||||||||||
Sbjct: 801 cataccctgatga 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |